FiT-DB / Search/ Help/ Sample detail

Os01g0102700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Translocon-associated beta family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.6 (0.0164) R2 : 0.0407
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.152 (0.0345) R2dN8 : 0.0526 R2N8 : 0.0407
σ : 0.308
deviance : 43.62
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
34.32 0.275 11.6 -0.312 0.26 0.367 0.151 -0.562 0.0298 2.5 19.1 2582 -- --
34.78 0.275 11.6 -0.219 0.26 0.465 0.0985 -- 0.0406 2.55 19.09 2584 -- --
34.39 0.273 11.6 -0.312 0.262 0.368 -- -0.54 0.0306 2.7 19.1 2582 -- --
34.63 0.274 11.6 -0.241 0.249 0.516 -- -- 0.0498 2.59 18.51 2638 -- --
38.34 0.288 11.6 -0.325 -- 0.416 -- -0.531 0.02 -- 19.2 2531 -- --
38.81 0.292 11.6 -0.0067 0.286 -- 0.042 -- 0.145 2.57 -- -- -- --
38.82 0.292 11.6 -0.0078 0.287 -- -- -- 0.145 2.62 -- -- -- --
38.32 0.288 11.6 -0.274 -- 0.608 -- -- 0.0427 -- 18.5 2548 -- --
35.89 0.279 11.6 -- 0.257 0.391 -- -- 0.0926 2.57 18.5 2636 -- --
43.62 0.309 11.6 0.00439 -- -- -- -- 0.152 -- -- -- -- --
38.82 0.291 11.6 -- 0.286 -- -- -- 0.146 2.62 -- -- -- --
39.75 0.294 11.6 -- -- 0.441 -- -- 0.0949 -- 18.42 2537 -- --
43.62 0.308 11.6 -- -- -- -- -- 0.152 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 33.65 temperature 20 720 > th dose independent rect. 3 3
7 34.18 wind 7 4320 > th dose independent rect. 15 2
9 34.29 wind 7 4320 < th dose independent rect. 15 2
14 34.37 temperature 20 720 > th dose independent rect. 19 12
17 34.44 wind 7 4320 < th dose independent rect. 15 4
18 34.44 temperature 10 720 > th dose dependent rect. 3 3
20 34.48 wind 7 4320 > th dose dependent rect. 15 1
21 34.49 radiation 1 1440 > th dose independent rect. 12 1
22 34.49 radiation 1 1440 > th dose independent rect. 10 3
25 34.51 temperature 20 4320 > th dose independent rect. 20 2
31 34.55 wind 1 14400 > th dose independent rect. 23 3
32 34.56 temperature 20 4320 < th dose independent rect. 20 2
56 34.68 wind 1 720 > th dose independent rect. 15 10
59 34.69 temperature 20 720 > th dose independent rect. 23 8
65 34.72 temperature 20 1440 < th dose independent rect. 23 1
66 34.72 radiation 20 1440 < th dose independent rect. 11 2
67 34.72 temperature 20 1440 < th dose independent rect. 22 3
68 34.72 temperature 20 1440 > th dose independent rect. 21 4
79 34.75 temperature 20 720 > th dose independent sin 10 NA
80 34.75 temperature 20 1440 < th dose independent rect. 5 2
98 34.78 temperature 20 1440 > th dose independent rect. 23 1
126 34.81 wind 5 4320 > th dose dependent rect. 15 4
128 34.82 temperature 20 720 > th dose independent rect. 14 17
134 34.84 temperature 20 1440 < th dose independent rect. 21 10
139 34.85 wind 7 720 < th dose independent rect. 15 19
159 34.88 temperature 10 720 > th dose dependent rect. 1 6
165 34.89 temperature 20 720 > th dose independent rect. 19 18
166 34.89 radiation 20 1440 < th dose dependent rect. 11 1
174 34.91 wind 7 720 < th dose independent rect. 15 3
180 34.91 atmosphere 1005 270 > th dose independent rect. 14 13
183 34.92 radiation 1 1440 < th dose independent rect. 13 1
192 34.92 temperature 20 720 > th dose independent rect. 12 19
193 34.92 radiation 1 1440 < th dose dependent rect. 13 1
213 34.95 wind 1 14400 < th dose independent rect. 23 3
225 34.96 radiation 10 1440 < th dose independent rect. 12 5
234 34.96 humidity 80 14400 > th dose dependent rect. 6 1
237 34.97 temperature 20 1440 < th dose independent sin 11 NA
273 34.99 wind 1 720 > th dose independent rect. 7 18
277 34.99 radiation 10 4320 > th dose dependent rect. 16 16
324 35.02 temperature 20 1440 < th dose independent rect. 15 16
326 35.02 temperature 20 1440 < th dose independent rect. 12 19
334 35.03 atmosphere 1005 720 > th dose independent rect. 15 10
406 35.06 radiation 10 4320 < th dose dependent rect. 1 4
408 35.07 radiation 1 1440 < th dose independent rect. 11 3
417 35.07 radiation 1 1440 < th dose dependent rect. 11 3
455 35.09 wind 1 4320 < th dose dependent rect. 6 1
489 35.12 radiation 40 4320 < th dose independent rect. 6 2
497 35.12 atmosphere 1005 30 > th dose independent rect. 15 14
522 35.13 temperature 20 1440 < th dose independent rect. 22 17
560 35.15 temperature 20 4320 > th dose independent sin 16 NA
564 35.15 atmosphere 1005 720 < th dose independent rect. 18 7
597 35.16 radiation 40 4320 < th dose independent rect. 20 12
615 35.16 radiation 10 4320 < th dose dependent rect. 3 2
617 35.17 temperature 20 4320 < th dose independent sin 16 NA
641 35.18 atmosphere 1005 720 < th dose independent rect. 19 5
661 35.19 radiation 40 4320 < th dose independent rect. 2 6
676 35.19 radiation 30 4320 > th dose dependent rect. 7 1
703 35.20 radiation 40 4320 < th dose independent rect. 22 10
722 35.21 atmosphere 1005 270 > th dose independent sin 13 NA
786 35.23 radiation 30 4320 > th dose independent rect. 16 16
822 35.25 radiation 30 4320 > th dose independent rect. 7 1
857 35.26 radiation 10 1440 < th dose independent sin 17 NA
865 35.26 wind 5 90 < th dose independent rect. 9 10
885 35.27 radiation 10 4320 > th dose dependent rect. 17 14
889 35.28 radiation 10 4320 > th dose independent rect. 16 16
890 35.28 radiation 30 4320 < th dose independent rect. 16 16
893 35.28 humidity 50 720 > th dose independent rect. 19 18
897 35.28 wind 7 43200 > th dose dependent rect. 16 1
903 35.29 humidity 50 720 > th dose independent rect. 10 14
917 35.29 humidity 50 720 > th dose independent rect. 10 21
945 35.31 atmosphere 1005 270 < th dose independent rect. 21 9
947 35.31 atmosphere 1005 30 > th dose independent rect. 18 11