BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0102700 Os01g0102700|AK063774
         (205 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G14030.1  | chr5:4526878-4528253 FORWARD LENGTH=196            155   1e-38

>AT5G14030.1 | chr5:4526878-4528253 FORWARD LENGTH=196
          Length = 195

 Score =  155 bits (393), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 70/123 (56%), Positives = 96/123 (78%)

Query: 29  HKKVSLSRPKPGVERLAVSLDLYNQGSATAYDVSINDDTWPKEAFELVSGEMSKTLERLD 88
           HKK +L+R K G ER++VS D+YNQGS++AYDV++ D++W K+ FE+V+G  SK+ ERLD
Sbjct: 34  HKKATLNRLKSGAERVSVSYDIYNQGSSSAYDVTLTDNSWDKKTFEVVNGNTSKSWERLD 93

Query: 89  PGVTASHAFVLETKVQGRFQGSPAVITYRVPTKAALQEAYSTPILALDVLAERPPEKKFE 148
            G   SH+  LE KV+G F G+PAV+T+R+PTK ALQEAYSTP+L LD+LA++PP K  +
Sbjct: 94  AGGILSHSIELEAKVKGVFYGAPAVVTFRIPTKPALQEAYSTPLLPLDILADKPPTKPLD 153

Query: 149 WVK 151
             K
Sbjct: 154 VAK 156



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.134    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,854,849
Number of extensions: 150900
Number of successful extensions: 285
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 285
Number of HSP's successfully gapped: 1
Length of query: 205
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 111
Effective length of database: 8,529,465
Effective search space: 946770615
Effective search space used: 946770615
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 109 (46.6 bits)