BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0102700 Os01g0102700|AK063774
(205 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0102700 Translocon-associated beta family protein 367 e-102
Os05g0103100 Translocon-associated beta family protein 269 9e-73
>Os01g0102700 Translocon-associated beta family protein
Length = 205
Score = 367 bits (942), Expect = e-102, Method: Compositional matrix adjust.
Identities = 177/177 (100%), Positives = 177/177 (100%)
Query: 29 HKKVSLSRPKPGVERLAVSLDLYNQGSATAYDVSINDDTWPKEAFELVSGEMSKTLERLD 88
HKKVSLSRPKPGVERLAVSLDLYNQGSATAYDVSINDDTWPKEAFELVSGEMSKTLERLD
Sbjct: 29 HKKVSLSRPKPGVERLAVSLDLYNQGSATAYDVSINDDTWPKEAFELVSGEMSKTLERLD 88
Query: 89 PGVTASHAFVLETKVQGRFQGSPAVITYRVPTKAALQEAYSTPILALDVLAERPPEKKFE 148
PGVTASHAFVLETKVQGRFQGSPAVITYRVPTKAALQEAYSTPILALDVLAERPPEKKFE
Sbjct: 89 PGVTASHAFVLETKVQGRFQGSPAVITYRVPTKAALQEAYSTPILALDVLAERPPEKKFE 148
Query: 149 WVKACGEVRVAGVRCWLGWSVYLPGCKPVKIQRCKSKQEEALIYLPTIYKAVFVLFY 205
WVKACGEVRVAGVRCWLGWSVYLPGCKPVKIQRCKSKQEEALIYLPTIYKAVFVLFY
Sbjct: 149 WVKACGEVRVAGVRCWLGWSVYLPGCKPVKIQRCKSKQEEALIYLPTIYKAVFVLFY 205
>Os05g0103100 Translocon-associated beta family protein
Length = 225
Score = 269 bits (688), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 126/173 (72%), Positives = 148/173 (85%)
Query: 29 HKKVSLSRPKPGVERLAVSLDLYNQGSATAYDVSINDDTWPKEAFELVSGEMSKTLERLD 88
KKV+LSRP PGVERLAV+L+LYNQGSATAYDVS+NDD+WP+EAF+L+SG SK +E+LD
Sbjct: 33 QKKVALSRPGPGVERLAVTLNLYNQGSATAYDVSLNDDSWPQEAFQLISGTTSKIVEKLD 92
Query: 89 PGVTASHAFVLETKVQGRFQGSPAVITYRVPTKAALQEAYSTPILALDVLAERPPEKKFE 148
PG TASH F+LETKVQG+FQGSPA+ITYRVPTKAALQEAYSTP+ LD+LAERPP++KFE
Sbjct: 93 PGATASHNFILETKVQGKFQGSPAIITYRVPTKAALQEAYSTPMFPLDILAERPPQQKFE 152
Query: 149 WVKACGEVRVAGVRCWLGWSVYLPGCKPVKIQRCKSKQEEALIYLPTIYKAVF 201
VK CGE+ VAG+RC+L VYLPGCKPVKI CK KQEEAL ++ VF
Sbjct: 153 LVKTCGEIWVAGLRCFLCRCVYLPGCKPVKIHCCKRKQEEALNLFCCLFFVVF 205
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.134 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,182,381
Number of extensions: 241972
Number of successful extensions: 463
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 463
Number of HSP's successfully gapped: 2
Length of query: 205
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 109
Effective length of database: 12,023,257
Effective search space: 1310535013
Effective search space used: 1310535013
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 153 (63.5 bits)