BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0691700 Os04g0691700|AK106305
(385 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0691700 Similar to Autoimmune regulator (Autoimmune po... 770 0.0
Os03g0747600 Zinc finger, FYVE/PHD-type domain containing p... 288 3e-78
Os01g0965700 241 5e-64
Os07g0693650 204 9e-53
Os07g0173400 Conserved hypothetical protein 112 4e-25
>Os04g0691700 Similar to Autoimmune regulator (Autoimmune polyendocrinopathy
candidiasis ectodermal dystrophy protein) (APECED
protein)
Length = 385
Score = 770 bits (1989), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/385 (96%), Positives = 371/385 (96%)
Query: 1 MDENDDTCGFCGDGGELLCCDNCPSTYHQTCLSDQELPEGSWYCHNCTCRSCGNPLSEKE 60
MDENDDTCGFCGDGGELLCCDNCPSTYHQTCLSDQELPEGSWYCHNCTCRSCGNPLSEKE
Sbjct: 1 MDENDDTCGFCGDGGELLCCDNCPSTYHQTCLSDQELPEGSWYCHNCTCRSCGNPLSEKE 60
Query: 61 VSTFSAILKCLQCGDSYHDTCIDQEMLPCGDKQSNIWFCGRYCKEIFIGLHNHVGIENFL 120
VSTFSAILKCLQCGDSYHDTCIDQEMLPCGDKQSNIWFCGRYCKEIFIGLHNHVGIENFL
Sbjct: 61 VSTFSAILKCLQCGDSYHDTCIDQEMLPCGDKQSNIWFCGRYCKEIFIGLHNHVGIENFL 120
Query: 121 DNELSWSILKCNTDGQKLHSSKKIAHMTECNTKLAVALTILEECFVRMVDPRTGVDMIPH 180
DNELSWSILKCNTDGQKLHSSKKIAHMTECNTKLAVALTILEECFVRMVDPRTGVDMIPH
Sbjct: 121 DNELSWSILKCNTDGQKLHSSKKIAHMTECNTKLAVALTILEECFVRMVDPRTGVDMIPH 180
Query: 181 VLYNKGSNFARLDYQGFYTVILEKGDEILCVASIRVHGTKAAELPFIATSVDYRRQGMCR 240
VLYNKGSNFARLDYQGFYTVILEKGDEILCVASIRVHGTKAAELPFIATSVDYRRQGMCR
Sbjct: 181 VLYNKGSNFARLDYQGFYTVILEKGDEILCVASIRVHGTKAAELPFIATSVDYRRQGMCR 240
Query: 241 RLMDTIEMMLRSFHVETLVLSAIPELVNTWVSGFGFKPIEDNEKKQLRNVNLMLFPGTSL 300
RLMDTIEMMLRSFHVETLVLSAIPELVNTWVSGFGFKPIEDNEKKQLRNVNLMLFPGTSL
Sbjct: 241 RLMDTIEMMLRSFHVETLVLSAIPELVNTWVSGFGFKPIEDNEKKQLRNVNLMLFPGTSL 300
Query: 301 LTKRLDGITAAKSEEDKDAYNVSGLPNGKCLPSRKGNGXXXXXXXXXXXXXXNTEDATNA 360
LTKRLDGITAAKSEEDKDAYNVSGLPNGKCLPSRKGNG NTEDATNA
Sbjct: 301 LTKRLDGITAAKSEEDKDAYNVSGLPNGKCLPSRKGNGHLELHDLDLLEAELNTEDATNA 360
Query: 361 SFRALKHECGPATWFNHAKLAVGEV 385
SFRALKHECGPATWFNHAKLAVGEV
Sbjct: 361 SFRALKHECGPATWFNHAKLAVGEV 385
>Os03g0747600 Zinc finger, FYVE/PHD-type domain containing protein
Length = 640
Score = 288 bits (738), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 139/313 (44%), Positives = 203/313 (64%), Gaps = 15/313 (4%)
Query: 2 DENDDTCGFCGDGGELLCCDNCPSTYHQTCLSDQELPEGSWYCHNCTCRSC---GNPLSE 58
D NDDTCG CGDGG L+CCD CPST+H +CL + LP W C C+C+ C ++
Sbjct: 271 DPNDDTCGICGDGGNLICCDGCPSTFHMSCLELEALPSDDWRCAKCSCKFCQEHSRQDAQ 330
Query: 59 KEVSTFSAILKCLQCGDSYHDTCIDQEMLPCG-DKQSNIWFCGRYCKEIFIGLHNHVGIE 117
S++ C QC + YH C + Q+ FC + C+ +F GL N + ++
Sbjct: 331 DIAEVDSSLCTCSQCEEKYHPGCSPETTNTSNVSSQACDLFCQQSCRLLFEGLRNLLAVK 390
Query: 118 NFLDNELSWSILKCNTDGQKLHSSK-----KIAHMTECNTKLAVALTILEECFVRMVDPR 172
L+ E S I+ Q++H + + ECN+K+AVAL++++ECF+ +VD R
Sbjct: 391 KDLEPEFSCRII------QRIHENVPETVVALDERVECNSKIAVALSLMDECFLPIVDQR 444
Query: 173 TGVDMIPHVLYNKGSNFARLDYQGFYTVILEKGDEILCVASIRVHGTKAAELPFIATSVD 232
TG+++I +V+YN GSNF R+D+ GFY +LE+GDEI+ AS+R+HGTK AE+PFI T
Sbjct: 445 TGINLIRNVVYNCGSNFVRMDFHGFYIFVLERGDEIIAAASVRIHGTKLAEMPFIGTRNM 504
Query: 233 YRRQGMCRRLMDTIEMMLRSFHVETLVLSAIPELVNTWVSGFGFKPIEDNEKKQLRNVNL 292
YRRQGMCRRL+D IEM+L S +VE L++ AI ELV+TW S FGF ++ +EK+++++ ++
Sbjct: 505 YRRQGMCRRLLDGIEMILSSLNVEKLIIPAIAELVDTWTSKFGFSSLDVSEKQEVKSTSM 564
Query: 293 MLFPGTSLLTKRL 305
++FPGT LL K L
Sbjct: 565 LVFPGTGLLQKPL 577
>Os01g0965700
Length = 896
Score = 241 bits (616), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 125/307 (40%), Positives = 180/307 (58%), Gaps = 16/307 (5%)
Query: 2 DENDDTCGFCGDGGELLCCDNCPSTYHQTCLSDQELPEGSWYCHNCTCRSCGNPLSEKEV 61
D +DD CG C DGG+LLCCD CPST+H CL+ Q P+GSW CH C C C + +V
Sbjct: 525 DCSDDACGVCADGGQLLCCDTCPSTFHPDCLAIQA-PDGSWSCHFCRCVLCMS----HDV 579
Query: 62 STFSAILKCLQCGDSYHDTCIDQEMLPCGDKQSNI-WFCGRYCKEIFIGLHNHVGIENFL 120
S C QC YH C P I +C CK++ L + +G+ N
Sbjct: 580 QGLST---CQQCTRKYHQYC-----RPLQSPGFEIGAYCSETCKKMSSHLSDMIGVMNHT 631
Query: 121 DNELSWSILKCNTDGQKLHSSKKIAHMTECNTKLAVALTILEECFVRMVDPRTGVDMIPH 180
++ SW++LK D +L +S+ + + E N KLAVAL +L ECF + D RT +DM+
Sbjct: 632 EDGFSWALLKIQKD--ELVTSEDMPVILESNVKLAVALGVLNECFNPVQDRRTKIDMLHQ 689
Query: 181 VLYNKGSNFARLDYQGFYTVILEKGDEILCVASIRVHGTKAAELPFIATSVDYRRQGMCR 240
+Y+ GS F R++Y+GFYT++LEK EI+ VA +R HG K AE+PF T Y++QGM R
Sbjct: 690 AVYSLGSEFKRVNYEGFYTMVLEKDGEIISVALLRFHGRKLAEMPFAGTLPAYQKQGMMR 749
Query: 241 RLMDTIEMMLRSFHVETLVLSAIPELVNTWVSGFGFKPIEDNEKKQLRNVNLMLFPGTSL 300
RL+ +E +L S VE LV+ A+ +LV TW F F+P++ + + + ++L+ GT+L
Sbjct: 750 RLVKAVEKVLASLQVENLVIPAVADLVETWKRSFSFRPMQAEVRDEAKKLSLVAITGTTL 809
Query: 301 LTKRLDG 307
L K +
Sbjct: 810 LQKPISA 816
>Os07g0693650
Length = 744
Score = 204 bits (519), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 113/321 (35%), Positives = 173/321 (53%), Gaps = 31/321 (9%)
Query: 2 DENDD-TCGFCGDGGELLCCDNCPSTYHQTCLSDQELPEGSWYCHNCTCRSCG-----NP 55
+E+DD C C D GELL CD CPS +H C+ + P+G W+C CTC CG +P
Sbjct: 407 EEDDDYVCSVCHDCGELLMCDRCPSMFHHACVGLESTPQGDWFCPACTCAICGSSDLDDP 466
Query: 56 LSEKEVSTFSA---ILKCLQCGDSYHDTCIDQE----MLPCGDKQSNIWFCGRYCKEIFI 108
+ FS+ ++ C QC YH C+ + P D + W C C +I++
Sbjct: 467 PATTTTQGFSSDRMVISCEQCRREYHVGCMRERDNGLWYPEADGEGP-WLCSEACSKIYL 525
Query: 109 GLHNHVGIE---NFLDNELSWSILK--CNTDGQKLHSSKKIAHMTECNTKLAVALTILEE 163
L ++ + + LS +L+ DG++ E + KL +AL +L E
Sbjct: 526 RLEELAVVQAPCRSVASGLSLVVLRRGAARDGEE-----------EEHAKLCMALDVLRE 574
Query: 164 CFVRMVDPRTGVDMIPHVLYNKGSNFARLDYQGFYTVILEKGDEILCVASIRVHGTKAAE 223
CFV +++PRT D+ +++N S RLD++GFY V LEK E++ VA++RV+G + AE
Sbjct: 575 CFVTLIEPRTQTDLTADIVFNTESELRRLDFRGFYVVGLEKAGELIAVATLRVYGEEVAE 634
Query: 224 LPFIATSVDYRRQGMCRRLMDTIEMMLRSFHVETLVLSAIPELVNTWVS-GFGFKPIEDN 282
+P + T RRQGMCR LMD I+ +L VE LVL A+PE+V TW FGF+ +
Sbjct: 635 VPLVGTRFARRRQGMCRLLMDEIQKLLGEMGVERLVLPAVPEMVATWTGPSFGFREMGQA 694
Query: 283 EKKQLRNVNLMLFPGTSLLTK 303
+++ + + ++ F GT + K
Sbjct: 695 DRQDVAHHAILRFQGTIMCHK 715
>Os07g0173400 Conserved hypothetical protein
Length = 502
Score = 112 bits (281), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 48/91 (52%), Positives = 68/91 (74%)
Query: 215 RVHGTKAAELPFIATSVDYRRQGMCRRLMDTIEMMLRSFHVETLVLSAIPELVNTWVSGF 274
R+HGT AE+PFI T YRRQGMC RL++ IE L S +V LV+ AIPEL NTW + F
Sbjct: 1 RIHGTDLAEMPFIGTRGIYRRQGMCHRLLNAIESALSSLNVRRLVIPAIPELQNTWTTVF 60
Query: 275 GFKPIEDNEKKQLRNVNLMLFPGTSLLTKRL 305
GFKP+E +++++++++N+++ GT LL KRL
Sbjct: 61 GFKPVEPSKRQKIKSLNILIIHGTGLLEKRL 91
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.137 0.437
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,837,657
Number of extensions: 572836
Number of successful extensions: 1397
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 1385
Number of HSP's successfully gapped: 5
Length of query: 385
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 282
Effective length of database: 11,657,759
Effective search space: 3287488038
Effective search space used: 3287488038
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)