BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0684300 Os04g0684300|AK105205
         (66 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0684300  Protein of unknown function DUF588 family protein   115   7e-27
Os08g0101900                                                       85   1e-17
Os06g0231050  Protein of unknown function DUF588 family protein    70   4e-13
Os04g0460400  Protein of unknown function DUF588 family protein    67   3e-12

>Os04g0684300 Protein of unknown function DUF588 family protein
          Length = 66

 Score =  115 bits (288), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 56/56 (100%), Positives = 56/56 (100%)

Query: 11 IVDLAHNGNLRANWVAICMQFHGFCQRTSGSVVASFLTVVILMFLVILAACSIRKR 66
          IVDLAHNGNLRANWVAICMQFHGFCQRTSGSVVASFLTVVILMFLVILAACSIRKR
Sbjct: 11 IVDLAHNGNLRANWVAICMQFHGFCQRTSGSVVASFLTVVILMFLVILAACSIRKR 66



>Os08g0101900 
          Length = 237

 Score = 84.7 bits (208), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 36/56 (64%), Positives = 48/56 (85%)

Query: 11  IVDLAHNGNLRANWVAICMQFHGFCQRTSGSVVASFLTVVILMFLVILAACSIRKR 66
           +V +AH GNLRANWV IC+QFHGFCQRTSG+V+ASFL V +LM L+++AA ++ +R
Sbjct: 176 MVYVAHEGNLRANWVPICLQFHGFCQRTSGAVIASFLAVFVLMVLIVMAAFTMPRR 231



>Os06g0231050 Protein of unknown function DUF588 family protein
          Length = 184

 Score = 69.7 bits (169), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 30/56 (53%), Positives = 42/56 (75%)

Query: 11  IVDLAHNGNLRANWVAICMQFHGFCQRTSGSVVASFLTVVILMFLVILAACSIRKR 66
           IV LAH GN RANW+AIC QF  FC+R SGS++ SF  +V+L+ L+ L+A ++ +R
Sbjct: 129 IVYLAHKGNARANWLAICQQFDSFCERISGSLIGSFAAMVVLVLLIFLSAIALARR 184



>Os04g0460400 Protein of unknown function DUF588 family protein
          Length = 186

 Score = 67.0 bits (162), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 29/56 (51%), Positives = 42/56 (75%)

Query: 11  IVDLAHNGNLRANWVAICMQFHGFCQRTSGSVVASFLTVVILMFLVILAACSIRKR 66
           IV LAH GN+RANW +IC QF  FC+R SGS++ SF  +V+L+ L+ L+A ++ +R
Sbjct: 130 IVYLAHKGNVRANWFSICQQFDSFCERISGSLIGSFAAMVLLVVLITLSAFALARR 185



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.337    0.141    0.449 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 1,767,507
Number of extensions: 43375
Number of successful extensions: 188
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 188
Number of HSP's successfully gapped: 5
Length of query: 66
Length of database: 17,035,801
Length adjustment: 38
Effective length of query: 28
Effective length of database: 15,051,669
Effective search space: 421446732
Effective search space used: 421446732
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 149 (62.0 bits)