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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0460400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF588 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.16 (0.0213) R2 : 0.00783
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0851 (0.0449) R2dN8 : 0.0101 R2N8 : 0.00783
σ : 0.401
deviance : 73.9
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
70.39 0.394 2.56 -1.18 0.134 46.4 -0.104 98.2 0.0944 6.93 15.02 696 -- --
72.85 0.401 3.16 0.0433 0.135 -0.0445 -0.134 -- 0.0875 7.27 15.02 696 -- --
70.4 0.391 2.6 -1.08 0.134 46.6 -- 98.5 0.0963 7.02 15.01 576 -- --
71.9 0.395 3.14 0.101 0.122 -0.139 -- -- 0.133 7.28 22.3 765 -- --
71.33 0.393 2.6 -1.08 -- 46.9 -- 99.1 0.0986 -- 15.1 576 -- --
72.85 0.4 3.16 0.0415 0.134 -- -0.131 -- 0.0871 7.24 -- -- -- --
72.9 0.4 3.16 0.0387 0.134 -- -- -- 0.0873 7.22 -- -- -- --
72.41 0.396 3.15 0.113 -- -0.193 -- -- 0.146 -- 21.6 807 -- --
72.02 0.395 3.15 -- 0.113 -0.146 -- -- 0.122 6.69 22 846 -- --
73.85 0.402 3.16 0.0412 -- -- -- -- 0.0896 -- -- -- -- --
72.94 0.4 3.16 -- 0.135 -- -- -- 0.083 7.2 -- -- -- --
72.7 0.397 3.15 -- -- -0.16 -- -- 0.129 -- 21.9 755 -- --
73.9 0.401 3.16 -- -- -- -- -- 0.0851 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 68.11 atmosphere 1015.0 720 < th dose independent rect. 3 8
2 68.49 wind 9.0 30 < th dose independent rect. 3 23
3 68.75 radiation 1.0 43200 < th dose dependent rect. 3 1
4 68.78 atmosphere 1005.0 90 > th dose dependent rect. 2 1
5 68.83 precipitation 0.1 720 < th dose independent rect. 3 8
6 68.83 precipitation 0.1 720 < th dose dependent rect. 3 8
8 68.95 precipitation 0.1 720 < th dose independent rect. 23 16
9 68.95 precipitation 0.1 720 < th dose dependent rect. 23 16
11 69.09 wind 7.0 720 < th dose dependent rect. 2 1
13 69.11 temperature 20.0 30 > th dose dependent rect. 2 1
14 69.12 atmosphere 1005.0 10 > th dose dependent rect. 2 2
15 69.14 temperature 20.0 30 > th dose independent rect. 2 1
16 69.15 atmosphere 1005.0 30 > th dose independent rect. 2 1
17 69.15 temperature 25.0 30 > th dose independent rect. 20 3
26 69.19 wind 9.0 720 < th dose independent rect. 3 8
28 69.21 wind 3.0 30 < th dose independent rect. 2 1
29 69.21 wind 5.0 30 < th dose dependent rect. 2 1
39 69.23 humidity 80.0 30 > th dose independent rect. 2 1
41 69.23 humidity 50.0 30 > th dose dependent rect. 2 1
47 69.24 temperature 10.0 30 > th dose independent rect. 2 1
49 69.24 temperature 30.0 30 < th dose independent rect. 2 1
50 69.24 humidity 50.0 30 > th dose independent rect. 2 1
54 69.24 atmosphere 1010.0 30 < th dose independent rect. 2 1
56 69.24 radiation 1.0 30 < th dose independent rect. 2 1
61 69.24 precipitation 0.1 30 < th dose independent rect. 2 1
62 69.24 temperature 10.0 30 > th dose independent rect. 3 23
63 69.24 atmosphere 1000.0 30 > th dose independent rect. 3 23
64 69.24 radiation 1.0 30 < th dose dependent rect. 2 1
71 69.24 precipitation 0.1 30 < th dose dependent rect. 2 1
75 69.26 wind 9.0 1440 < th dose independent rect. 3 1
76 69.26 temperature 10.0 1440 > th dose independent rect. 3 1
79 69.26 temperature 30.0 1440 < th dose independent rect. 3 1
83 69.26 humidity 50.0 1440 > th dose independent rect. 3 1
92 69.26 atmosphere 995.0 1440 > th dose independent rect. 3 1
93 69.26 radiation 1.0 1440 < th dose independent rect. 3 1
113 69.26 temperature 10.0 1440 > th dose independent rect. 4 23
123 69.26 temperature 10.0 90 > th dose dependent rect. 5 14
127 69.37 wind 1.0 30 > th dose independent rect. 2 1
128 69.37 atmosphere 1015.0 30 < th dose dependent rect. 2 1
129 69.37 temperature 25.0 30 > th dose dependent rect. 20 3
132 69.38 atmosphere 1005.0 30 > th dose dependent rect. 20 3
133 69.41 temperature 15.0 720 > th dose independent rect. 3 8
135 69.41 temperature 30.0 30 < th dose dependent rect. 2 1
136 69.41 temperature 25.0 720 > th dose dependent rect. 4 5
142 69.45 temperature 25.0 90 > th dose dependent rect. 1 3
143 69.46 temperature 25.0 720 > th dose dependent rect. 6 2
157 69.50 atmosphere 1015.0 720 < th dose independent rect. 3 16
159 69.53 atmosphere 995.0 720 > th dose independent rect. 23 16
162 69.55 precipitation 0.1 720 < th dose independent rect. 15 8
166 69.55 precipitation 0.1 720 < th dose dependent rect. 15 8
174 69.60 temperature 25.0 90 > th dose independent rect. 1 3
186 69.67 temperature 25.0 720 > th dose independent rect. 4 5
201 69.71 wind 9.0 10 < th dose independent rect. 21 23
233 69.74 temperature 15.0 90 > th dose independent rect. 5 14
234 69.74 precipitation 0.1 30 < th dose independent rect. 3 23
236 69.74 precipitation 0.1 30 < th dose dependent rect. 3 23
237 69.75 atmosphere 1015.0 720 < th dose independent rect. 3 6
244 69.78 radiation 1.0 720 < th dose dependent rect. 24 13
245 69.79 temperature 25.0 30 > th dose independent rect. 4 1
248 69.80 atmosphere 1015.0 720 < th dose independent rect. 23 16
251 69.82 atmosphere 995.0 720 > th dose independent rect. 3 8
252 69.82 temperature 10.0 720 > th dose independent rect. 11 16
262 69.85 temperature 10.0 720 > th dose independent rect. 15 8
263 69.85 humidity 50.0 720 > th dose independent rect. 3 8
264 69.85 temperature 10.0 720 > th dose independent rect. 23 16
266 69.86 wind 7.0 90 < th dose independent rect. 5 14
268 69.89 temperature 10.0 30 > th dose dependent rect. 23 21
272 69.92 precipitation 0.1 720 < th dose independent rect. 11 16
276 69.92 precipitation 0.1 720 < th dose dependent rect. 11 16
277 69.93 wind 7.0 1440 < th dose independent rect. 23 1
296 69.98 atmosphere 1005.0 10 > th dose dependent rect. 22 1
298 69.99 temperature 15.0 720 > th dose independent rect. 5 4
299 69.99 temperature 30.0 720 < th dose independent rect. 15 6
301 69.99 precipitation 0.1 720 < th dose independent rect. 3 16
302 69.99 humidity 90.0 30 < th dose dependent rect. 22 1
308 69.99 precipitation 0.1 720 < th dose dependent rect. 3 16
309 70.00 temperature 10.0 720 > th dose dependent rect. 5 4
310 70.00 temperature 10.0 720 > th dose dependent rect. 3 6
315 70.02 atmosphere 1005.0 10 > th dose independent rect. 22 1
316 70.02 atmosphere 1015.0 720 < th dose independent rect. 23 10
318 70.03 temperature 25.0 90 > th dose dependent rect. 4 1
319 70.03 temperature 25.0 30 > th dose dependent rect. 22 1
328 70.05 wind 1.0 30 > th dose independent rect. 22 1
329 70.05 wind 3.0 720 < th dose independent rect. 2 1
330 70.05 humidity 90.0 10 < th dose independent rect. 22 1
336 70.06 wind 5.0 30 < th dose independent rect. 22 1
339 70.06 temperature 10.0 30 > th dose independent rect. 22 1
342 70.06 temperature 30.0 30 < th dose independent rect. 22 1
343 70.06 humidity 50.0 30 > th dose independent rect. 22 1
347 70.06 atmosphere 995.0 30 > th dose independent rect. 22 1
348 70.06 atmosphere 1010.0 30 < th dose independent rect. 22 1
350 70.06 radiation 1.0 30 < th dose independent rect. 22 1
355 70.06 precipitation 0.1 30 < th dose independent rect. 22 1
357 70.06 temperature 10.0 30 > th dose independent rect. 23 23
359 70.06 wind 7.0 30 < th dose dependent rect. 22 1
361 70.06 temperature 30.0 30 < th dose dependent rect. 22 1
362 70.06 radiation 1.0 30 < th dose dependent rect. 22 1
367 70.06 precipitation 0.1 30 < th dose dependent rect. 22 1
371 70.07 temperature 15.0 720 > th dose dependent rect. 8 1
372 70.07 temperature 10.0 30 > th dose dependent rect. 22 1
379 70.08 wind 7.0 30 < th dose independent rect. 23 21
380 70.08 humidity 50.0 30 > th dose independent rect. 3 23
382 70.08 humidity 50.0 30 > th dose dependent rect. 22 1
383 70.08 temperature 10.0 30 > th dose dependent rect. 3 23
385 70.09 wind 1.0 30 > th dose dependent rect. 22 1
389 70.10 temperature 25.0 270 > th dose independent rect. 18 9
393 70.10 wind 9.0 10 < th dose independent rect. 23 23
394 70.10 atmosphere 995.0 30 > th dose independent rect. 23 23
396 70.10 atmosphere 1015.0 30 < th dose dependent rect. 22 1
400 70.11 temperature 10.0 1440 > th dose independent rect. 23 1
403 70.11 temperature 30.0 1440 < th dose independent rect. 23 1
407 70.11 humidity 50.0 1440 > th dose independent rect. 23 1
417 70.11 atmosphere 995.0 1440 > th dose independent rect. 23 1
418 70.11 radiation 1.0 1440 < th dose independent rect. 23 1
438 70.11 wind 7.0 90 < th dose independent rect. 23 12
439 70.11 radiation 1.0 720 < th dose independent rect. 24 14
440 70.11 temperature 10.0 1440 > th dose independent rect. 24 23
444 70.11 precipitation 0.1 720 < th dose independent rect. 12 23
447 70.11 radiation 1.0 1440 < th dose dependent rect. 23 1
456 70.11 precipitation 0.1 720 < th dose dependent rect. 12 23
458 70.12 atmosphere 1005.0 30 > th dose independent rect. 20 3
462 70.12 temperature 30.0 720 < th dose independent rect. 9 12
471 70.13 atmosphere 1000.0 10 > th dose independent rect. 14 12
502 70.15 radiation 30.0 30 < th dose independent rect. 23 12
508 70.16 atmosphere 995.0 720 > th dose independent rect. 11 16
509 70.16 temperature 30.0 720 < th dose independent rect. 15 22
515 70.17 temperature 25.0 720 > th dose independent rect. 8 1
524 70.18 precipitation 0.1 720 < th dose independent rect. 3 23
527 70.18 radiation 1.0 720 < th dose dependent rect. 18 9
529 70.18 precipitation 0.1 720 < th dose dependent rect. 3 23
530 70.19 temperature 15.0 90 > th dose independent rect. 23 12
536 70.20 radiation 10.0 720 > th dose independent rect. 8 1
538 70.20 atmosphere 1015.0 720 < th dose independent rect. 21 12
545 70.22 radiation 40.0 30 < th dose independent rect. 14 12
553 70.23 wind 1.0 10 > th dose independent rect. 23 12
556 70.23 atmosphere 1000.0 30 > th dose independent rect. 23 12
563 70.24 wind 9.0 720 < th dose independent rect. 23 16
569 70.25 atmosphere 1000.0 720 > th dose independent rect. 3 6
570 70.25 atmosphere 1000.0 10 > th dose independent rect. 2 12
580 70.26 temperature 15.0 1440 > th dose independent rect. 10 14
600 70.29 humidity 90.0 90 < th dose independent rect. 2 1
601 70.29 atmosphere 995.0 720 > th dose independent rect. 15 8
607 70.31 temperature 30.0 720 < th dose independent rect. 1 20
609 70.31 atmosphere 995.0 720 > th dose independent rect. 15 23
610 70.31 temperature 30.0 10 < th dose dependent rect. 2 12
615 70.32 atmosphere 995.0 720 > th dose independent rect. 3 23
621 70.33 precipitation 0.1 720 < th dose independent rect. 21 18
624 70.33 precipitation 0.1 720 < th dose dependent rect. 21 18
626 70.34 temperature 15.0 720 > th dose independent rect. 5 10
629 70.34 temperature 15.0 1440 > th dose independent rect. 8 16
634 70.35 temperature 10.0 10 > th dose independent rect. 2 12
636 70.35 temperature 10.0 10 > th dose independent rect. 14 12
638 70.35 atmosphere 1000.0 720 > th dose independent rect. 21 12
639 70.35 atmosphere 1015.0 10 < th dose independent rect. 2 12
640 70.35 atmosphere 1000.0 30 > th dose independent rect. 23 21
647 70.37 precipitation 0.1 1440 < th dose independent rect. 23 1
649 70.37 precipitation 0.1 10 < th dose independent rect. 2 12
650 70.37 precipitation 0.1 1440 < th dose dependent rect. 23 1
653 70.37 precipitation 0.1 10 < th dose dependent rect. 2 12
658 70.38 precipitation 0.1 720 < th dose independent rect. 3 6
659 70.38 temperature 15.0 720 > th dose independent rect. 7 8
660 70.38 humidity 60.0 10 > th dose independent rect. 14 12
664 70.38 precipitation 0.1 720 < th dose dependent rect. 3 6
675 70.40 temperature 15.0 720 > th dose independent no NA NA
676 70.40 humidity 90.0 90 < th dose independent rect. 2 3
679 70.40 radiation 40.0 720 < th dose independent rect. 15 8
684 70.41 temperature 15.0 720 > th dose independent sin 11 NA
685 70.41 temperature 15.0 720 > th dose independent sin 1 NA
686 70.41 humidity 90.0 30 < th dose independent rect. 20 3
690 70.41 atmosphere 995.0 720 > th dose independent rect. 12 23
727 70.42 humidity 80.0 14400 < th dose dependent rect. 4 5
733 70.43 temperature 30.0 720 < th dose independent rect. 15 15
735 70.43 wind 1.0 14400 < th dose dependent rect. 6 1
739 70.43 radiation 1.0 270 < th dose dependent rect. 6 22
745 70.44 precipitation 0.1 10 < th dose independent rect. 14 12
748 70.44 temperature 15.0 90 > th dose independent rect. 23 20
749 70.44 wind 1.0 30 > th dose dependent rect. 4 1
752 70.44 precipitation 0.1 10 < th dose dependent rect. 14 12
754 70.45 temperature 15.0 1440 > th dose independent rect. 10 1
755 70.45 atmosphere 995.0 720 > th dose independent rect. 14 1
758 70.45 radiation 10.0 720 > th dose independent rect. 17 16
759 70.45 radiation 1.0 270 < th dose independent rect. 6 22
762 70.46 wind 1.0 720 > th dose independent rect. 14 1
764 70.46 precipitation 0.1 14400 > th dose independent rect. 23 9
765 70.46 precipitation 0.1 14400 < th dose independent rect. 23 9
771 70.46 humidity 80.0 14400 < th dose dependent rect. 7 2
772 70.46 precipitation 0.1 14400 < th dose dependent rect. 23 9
785 70.48 wind 9.0 10 < th dose independent rect. 14 12
792 70.48 precipitation 0.1 720 < th dose independent rect. 13 20
796 70.48 precipitation 0.1 720 < th dose dependent rect. 13 20
814 70.49 temperature 10.0 720 > th dose dependent rect. 23 1
828 70.50 atmosphere 995.0 720 > th dose independent rect. 9 12
833 70.51 wind 1.0 720 > th dose independent rect. 11 1
834 70.51 precipitation 0.1 720 < th dose independent rect. 14 1
837 70.51 temperature 15.0 1440 > th dose independent rect. 21 14
843 70.51 precipitation 0.1 720 < th dose dependent rect. 14 1
844 70.51 temperature 10.0 30 > th dose dependent rect. 23 12
855 70.52 temperature 10.0 30 > th dose dependent rect. 23 23
856 70.53 temperature 15.0 720 > th dose independent sin 3 NA
859 70.53 temperature 10.0 720 > th dose independent rect. 14 1
865 70.53 atmosphere 1015.0 720 < th dose independent rect. 14 1
872 70.53 wind 1.0 30 > th dose independent rect. 11 12
879 70.53 temperature 10.0 720 > th dose independent rect. 15 23
889 70.53 humidity 90.0 270 > th dose dependent rect. 11 3
891 70.53 temperature 20.0 10 < th dose dependent rect. 3 9
896 70.54 wind 9.0 4320 > th dose independent sin 5 NA
899 70.54 radiation 1.0 720 < th dose independent rect. 18 9
905 70.54 humidity 90.0 14400 > th dose dependent rect. 20 1
906 70.54 radiation 1.0 1440 < th dose dependent rect. 21 1
914 70.54 atmosphere 995.0 30 > th dose dependent rect. 11 12
920 70.55 humidity 80.0 4320 > th dose independent rect. 5 5
921 70.55 wind 9.0 720 < th dose independent rect. 15 6
922 70.55 humidity 80.0 4320 < th dose independent rect. 5 6
925 70.55 temperature 10.0 1440 > th dose independent rect. 3 12
928 70.55 temperature 10.0 1440 > th dose independent rect. 15 12
931 70.55 temperature 30.0 10 < th dose independent rect. 2 12
934 70.55 radiation 1.0 270 < th dose dependent rect. 17 21
936 70.56 humidity 70.0 14400 > th dose independent rect. 8 1
937 70.56 atmosphere 995.0 720 > th dose independent rect. 11 1
938 70.56 atmosphere 1015.0 720 < th dose independent rect. 11 1
939 70.56 precipitation 0.1 720 < th dose independent rect. 11 1
941 70.56 humidity 90.0 270 > th dose independent rect. 11 3
943 70.56 wind 9.0 720 < th dose independent rect. 15 8
945 70.56 temperature 10.0 1440 > th dose independent rect. 12 12
948 70.56 temperature 10.0 1440 > th dose independent rect. 24 12
951 70.56 temperature 30.0 10 < th dose independent rect. 14 12
952 70.56 temperature 30.0 30 < th dose independent rect. 23 12
953 70.56 atmosphere 995.0 1440 > th dose independent rect. 24 12
954 70.56 temperature 10.0 720 > th dose independent rect. 12 23
956 70.56 atmosphere 995.0 720 > th dose dependent rect. 2 1
957 70.56 precipitation 0.1 720 < th dose dependent rect. 11 1
961 70.57 humidity 50.0 720 > th dose independent rect. 11 1
967 70.57 temperature 15.0 1440 > th dose independent rect. 21 16
968 70.57 atmosphere 1015.0 720 < th dose independent rect. 13 20
969 70.57 temperature 25.0 90 > th dose dependent rect. 20 9
972 70.58 temperature 15.0 720 > th dose independent sin 23 NA
973 70.58 wind 1.0 720 > th dose independent rect. 23 1
986 70.58 wind 1.0 720 > th dose independent rect. 15 8
988 70.58 atmosphere 1000.0 90 > th dose independent rect. 11 12
989 70.58 precipitation 0.1 720 < th dose independent rect. 21 12
992 70.58 temperature 15.0 1440 > th dose independent rect. 21 20
997 70.58 atmosphere 1015.0 4320 > th dose dependent rect. 11 1