BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0460400 Os04g0460400|Os04g0460400
         (186 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0460400  Protein of unknown function DUF588 family protein   261   2e-70
Os06g0231050  Protein of unknown function DUF588 family protein   200   5e-52
Os02g0743900                                                      160   6e-40
Os08g0101900                                                      115   2e-26

>Os04g0460400 Protein of unknown function DUF588 family protein
          Length = 186

 Score =  261 bits (667), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 135/186 (72%), Positives = 135/186 (72%)

Query: 1   MEHGEISSKAPLXXXXXXXXXXXXXXXDTFLRFXXXXXXXXXXXXXXXXNETLPFFTQFI 60
           MEHGEISSKAPL               DTFLRF                NETLPFFTQFI
Sbjct: 1   MEHGEISSKAPLVAPVAAGVNRAVAVVDTFLRFIAIIGTIGSAIAMGTTNETLPFFTQFI 60

Query: 61  QFEAKYSDLPSFTFFVAANAVVCTYLVLSIPLSIVHILRPRARYSRLFLVFFDTXXXXXX 120
           QFEAKYSDLPSFTFFVAANAVVCTYLVLSIPLSIVHILRPRARYSRLFLVFFDT      
Sbjct: 61  QFEAKYSDLPSFTFFVAANAVVCTYLVLSIPLSIVHILRPRARYSRLFLVFFDTAMLALL 120

Query: 121 XXXXXXXXXXXXXXHKGNVRANWFSICQQFDSFCERISGSLIGSFAAMVLLVVLITLSAF 180
                         HKGNVRANWFSICQQFDSFCERISGSLIGSFAAMVLLVVLITLSAF
Sbjct: 121 TAGASAAAAIVYLAHKGNVRANWFSICQQFDSFCERISGSLIGSFAAMVLLVVLITLSAF 180

Query: 181 ALARRH 186
           ALARRH
Sbjct: 181 ALARRH 186



>Os06g0231050 Protein of unknown function DUF588 family protein
          Length = 184

 Score =  200 bits (509), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 102/184 (55%), Positives = 119/184 (64%), Gaps = 5/184 (2%)

Query: 2   EHGEISSKAPLXXXXXXXXXXXXXXXDTFLRFXXXXXXXXXXXXXXXXNETLPFFTQFIQ 61
           EHGE +SKAPL               D  LRF                N+TLPFFTQFI+
Sbjct: 6   EHGE-TSKAPLSRGVSKGVSIL----DVILRFVAIIGTLASAIAMGTTNQTLPFFTQFIR 60

Query: 62  FEAKYSDLPSFTFFVAANAVVCTYLVLSIPLSIVHILRPRARYSRLFLVFFDTXXXXXXX 121
           F+A+YSDLP+ TFFV AN++V  YL+LS+PLSIVH++R RA+YSRL L+FFD        
Sbjct: 61  FKAQYSDLPTLTFFVVANSIVSAYLILSLPLSIVHVIRSRAKYSRLILIFFDAAMLALVT 120

Query: 122 XXXXXXXXXXXXXHKGNVRANWFSICQQFDSFCERISGSLIGSFAAMVLLVVLITLSAFA 181
                        HKGN RANW +ICQQFDSFCERISGSLIGSFAAMV+LV+LI LSA A
Sbjct: 121 AGASAAAAIVYLAHKGNARANWLAICQQFDSFCERISGSLIGSFAAMVVLVLLIFLSAIA 180

Query: 182 LARR 185
           LARR
Sbjct: 181 LARR 184



>Os02g0743900 
          Length = 201

 Score =  160 bits (404), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 75/138 (54%), Positives = 88/138 (63%)

Query: 28  DTFLRFXXXXXXXXXXXXXXXXNETLPFFTQFIQFEAKYSDLPSFTFFVAANAVVCTYLV 87
           D  LR                 N+TLPFFTQF++F+A+YSDLP+ T FV AN+ V  YLV
Sbjct: 44  DLILRVVAVVAIVDSAIAMGTTNQTLPFFTQFLRFKAQYSDLPTLTLFVVANSAVTAYLV 103

Query: 88  LSIPLSIVHILRPRARYSRLFLVFFDTXXXXXXXXXXXXXXXXXXXXHKGNVRANWFSIC 147
           LSIPLS+VHI+R RA YSRL L+F D+                    HKGNVRANWF++C
Sbjct: 104 LSIPLSVVHIIRSRASYSRLVLIFLDSVMLALVAAVASASAAIVYLAHKGNVRANWFAVC 163

Query: 148 QQFDSFCERISGSLIGSF 165
           QQFDSFCERISG LIGSF
Sbjct: 164 QQFDSFCERISGPLIGSF 181



>Os08g0101900 
          Length = 237

 Score =  115 bits (288), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 55/136 (40%), Positives = 79/136 (58%)

Query: 50  NETLPFFTQFIQFEAKYSDLPSFTFFVAANAVVCTYLVLSIPLSIVHILRPRARYSRLFL 109
           +E L  FT + QF A++ D P+F FF+ ANA+   Y+VLS+P S   I+  +A   +L L
Sbjct: 96  DERLSVFTNYFQFRARFDDFPAFEFFIVANAIAAGYMVLSLPFSAATIMSSKATGVKLLL 155

Query: 110 VFFDTXXXXXXXXXXXXXXXXXXXXHKGNVRANWFSICQQFDSFCERISGSLIGSFAAMV 169
           +  DT                    H+GN+RANW  IC QF  FC+R SG++I SF A+ 
Sbjct: 156 LICDTIMVGLLTAAASAAAAMVYVAHEGNLRANWVPICLQFHGFCQRTSGAVIASFLAVF 215

Query: 170 LLVVLITLSAFALARR 185
           +L+VLI ++AF + RR
Sbjct: 216 VLMVLIVMAAFTMPRR 231



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.333    0.142    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,709,394
Number of extensions: 93689
Number of successful extensions: 300
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 300
Number of HSP's successfully gapped: 4
Length of query: 186
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 91
Effective length of database: 12,075,471
Effective search space: 1098867861
Effective search space used: 1098867861
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 153 (63.5 bits)