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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0684300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF588 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.99 (0.00983) R2 : 0.00253
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0223 (0.0207) R2dN8 : 0.00327 R2N8 : 0.00253
σ : 0.185
deviance : 15.72
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
13.94 0.175 2.99 0.0442 0.069 0.38 0.00577 1.41 -0.0168 8.01 1015 598 -- --
14.87 0.181 2.98 0.0643 0.0678 0.367 -0.0581 -- -0.0122 7.64 1015 598 -- --
13.94 0.174 2.99 0.0444 0.0691 0.38 -- 1.41 -0.0168 7.97 1015 597 -- --
14.87 0.181 2.98 0.0631 0.0676 0.369 -- -- -0.012 7.87 1015 462 -- --
14.19 0.175 2.99 0.0453 -- 0.36 -- 1.4 -0.0158 -- 1015 580 -- --
15.39 0.184 2.99 0.0638 0.0627 -- -0.0807 -- -0.0166 6.94 -- -- -- --
15.4 0.184 2.99 0.0625 0.0624 -- -- -- -0.0163 7.22 -- -- -- --
15.12 0.182 2.99 0.0638 -- 0.351 -- -- -0.0112 -- 1015 462 -- --
14.98 0.181 2.99 -- 0.068 0.368 -- -- -0.019 7.8 1015 462 -- --
15.61 0.185 2.99 0.0637 -- -- -- -- -0.0152 -- -- -- -- --
15.51 0.184 2.99 -- 0.063 -- -- -- -0.0232 7.15 -- -- -- --
15.23 0.182 2.99 -- -- 0.351 -- -- -0.0183 -- 1015 328 -- --
15.72 0.185 2.99 -- -- -- -- -- -0.0223 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 13.46 atmosphere 1015 30 < th dose independent rect. 21 23
3 13.73 humidity 50 1440 < th dose independent rect. 10 2
20 13.74 atmosphere 1015 720 < th dose independent rect. 21 8
21 13.74 atmosphere 1015 720 < th dose independent rect. 17 16
22 13.74 humidity 50 1440 < th dose dependent rect. 11 1
41 13.87 atmosphere 1015 720 < th dose independent sin 23 NA
42 13.87 atmosphere 1015 720 < th dose independent rect. 17 8
44 13.88 atmosphere 1015 720 < th dose independent rect. 13 16
46 13.90 atmosphere 1015 10 < th dose independent sin 7 NA
51 13.90 atmosphere 1015 720 < th dose independent sin 12 NA
52 13.90 atmosphere 1015 10 < th dose independent sin 18 NA
60 13.90 atmosphere 1015 270 < th dose independent rect. 8 23
142 13.93 atmosphere 1015 720 > th dose independent sin 16 NA
151 13.93 atmosphere 1015 720 > th dose independent rect. 22 3
183 13.93 atmosphere 1015 720 > th dose independent rect. 3 20
192 13.93 atmosphere 1015 720 > th dose dependent sin 20 NA
194 13.93 atmosphere 1015 720 > th dose dependent rect. 2 22
195 13.94 atmosphere 1015 720 > th dose independent sin 14 NA
198 13.94 atmosphere 1015 720 > th dose independent sin 23 NA
226 13.94 atmosphere 1015 720 < th dose independent rect. 10 23
227 13.94 atmosphere 1015 720 < th dose independent rect. 16 23
231 13.94 atmosphere 1015 720 > th dose dependent sin 23 NA
232 13.94 atmosphere 1015 720 > th dose dependent rect. 21 4
247 13.94 atmosphere 1015 720 > th dose dependent rect. 3 19
252 13.95 atmosphere 1015 720 > th dose independent sin 12 NA
255 13.95 atmosphere 1015 720 > th dose independent no NA NA
262 13.95 atmosphere 1015 720 < th dose independent no NA NA
412 13.96 atmosphere 1015 1440 > th dose independent rect. 23 1
432 13.96 atmosphere 1015 720 < th dose independent rect. 2 23
444 13.97 atmosphere 1015 1440 < th dose independent rect. 23 1
488 13.97 atmosphere 1015 720 > th dose dependent rect. 22 1
490 13.98 atmosphere 1015 10 > th dose independent sin 7 NA
588 13.98 atmosphere 1015 10 > th dose independent no NA NA
596 13.98 atmosphere 1015 10 < th dose independent no NA NA
607 13.98 atmosphere 1015 10 > th dose independent rect. 23 1