BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0684300 Os04g0684300|AK105205
(66 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G27370.1 | chr2:11708628-11709905 REVERSE LENGTH=222 73 3e-14
AT1G14160.1 | chr1:4840798-4841660 REVERSE LENGTH=210 66 3e-12
AT5G06200.1 | chr5:1877333-1878116 FORWARD LENGTH=203 65 5e-12
AT5G15290.1 | chr5:4967094-4967846 FORWARD LENGTH=188 56 3e-09
AT3G11550.1 | chr3:3638262-3639052 FORWARD LENGTH=205 47 2e-06
AT2G36100.1 | chr2:15159744-15160669 REVERSE LENGTH=207 47 2e-06
>AT2G27370.1 | chr2:11708628-11709905 REVERSE LENGTH=222
Length = 221
Score = 72.8 bits (177), Expect = 3e-14, Method: Composition-based stats.
Identities = 32/55 (58%), Positives = 43/55 (78%)
Query: 11 IVDLAHNGNLRANWVAICMQFHGFCQRTSGSVVASFLTVVILMFLVILAACSIRK 65
IV LAHNGN +NW+ +C QF FCQ TSG+VVASF+ +LMFLVIL+A ++++
Sbjct: 165 IVYLAHNGNSSSNWLPVCQQFGDFCQGTSGAVVASFIAATLLMFLVILSAFALKR 219
>AT1G14160.1 | chr1:4840798-4841660 REVERSE LENGTH=210
Length = 209
Score = 66.2 bits (160), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 38/54 (70%)
Query: 12 VDLAHNGNLRANWVAICMQFHGFCQRTSGSVVASFLTVVILMFLVILAACSIRK 65
V LAH GN ANW IC QF GFC+R SGS++ SF V++LM +VI +A S+ +
Sbjct: 155 VYLAHEGNTTANWPPICQQFDGFCERISGSLIGSFCAVILLMLIVINSAISLSR 208
>AT5G06200.1 | chr5:1877333-1878116 FORWARD LENGTH=203
Length = 202
Score = 65.5 bits (158), Expect = 5e-12, Method: Composition-based stats.
Identities = 28/55 (50%), Positives = 40/55 (72%)
Query: 11 IVDLAHNGNLRANWVAICMQFHGFCQRTSGSVVASFLTVVILMFLVILAACSIRK 65
IV LAHNGN NW+ IC QF FCQ+TSG+VV++F +V L LV+++ S+++
Sbjct: 147 IVYLAHNGNTNTNWLPICQQFGDFCQKTSGAVVSAFASVTFLAILVVISGVSLKR 201
>AT5G15290.1 | chr5:4967094-4967846 FORWARD LENGTH=188
Length = 187
Score = 56.2 bits (134), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 23/36 (63%), Positives = 28/36 (77%)
Query: 11 IVDLAHNGNLRANWVAICMQFHGFCQRTSGSVVASF 46
IV LAHNGN + NW AIC QF+ FC+R SGS++ SF
Sbjct: 131 IVYLAHNGNNKTNWFAICQQFNSFCERISGSLIGSF 166
>AT3G11550.1 | chr3:3638262-3639052 FORWARD LENGTH=205
Length = 204
Score = 47.4 bits (111), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 39/52 (75%)
Query: 14 LAHNGNLRANWVAICMQFHGFCQRTSGSVVASFLTVVILMFLVILAACSIRK 65
LAH+GN NW+ IC QF FCQ++SG+VV++F++VV LV+++ ++++
Sbjct: 152 LAHSGNQNTNWLPICQQFGDFCQKSSGAVVSAFVSVVFFTILVVISGVALKR 203
>AT2G36100.1 | chr2:15159744-15160669 REVERSE LENGTH=207
Length = 206
Score = 46.6 bits (109), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 22/35 (62%)
Query: 11 IVDLAHNGNLRANWVAICMQFHGFCQRTSGSVVAS 45
I LAHNGN NW+ IC QF FCQ S +VVA
Sbjct: 151 ITYLAHNGNQSTNWLPICQQFGDFCQNVSTAVVAD 185
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.337 0.141 0.449
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,141,939
Number of extensions: 28296
Number of successful extensions: 123
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 6
Length of query: 66
Length of database: 11,106,569
Length adjustment: 39
Effective length of query: 27
Effective length of database: 10,037,345
Effective search space: 271008315
Effective search space used: 271008315
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 104 (44.7 bits)