BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0672900 Os04g0672900|AK065014
(448 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0672900 Conserved hypothetical protein 735 0.0
Os02g0631000 Conserved hypothetical protein 310 1e-84
Os04g0522750 107 1e-23
>Os04g0672900 Conserved hypothetical protein
Length = 448
Score = 735 bits (1897), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/448 (82%), Positives = 368/448 (82%)
Query: 1 MAEGDXXXXXXXXXXXXXXXXXXXXXXXXQKRRQRGLVSRVWKGIFGRREDVEKLLQALS 60
MAEGD QKRRQRGLVSRVWKGIFGRREDVEKLLQALS
Sbjct: 1 MAEGDAYAASAAASAASPRTPAPPETPSTQKRRQRGLVSRVWKGIFGRREDVEKLLQALS 60
Query: 61 KEEEAVXXXXXXXXXXXXXXXHNVXXXXXXXXXXXVGYAIMTTRSPDLSWQMRATRVLPM 120
KEEEAV HNV VGYAIMTTRSPDLSWQMRATRVLPM
Sbjct: 61 KEEEAVRSRLRRRARASRQSAHNVLAIAAALEIAAVGYAIMTTRSPDLSWQMRATRVLPM 120
Query: 121 FLIPALAALIYSTITSVTKMLDNRDQHTLENLRAERQAKIDELKERTNYYTTQQLIQRYD 180
FLIPALAALIYSTITSVTKMLDNRDQHTLENLRAERQAKIDELKERTNYYTTQQLIQRYD
Sbjct: 121 FLIPALAALIYSTITSVTKMLDNRDQHTLENLRAERQAKIDELKERTNYYTTQQLIQRYD 180
Query: 181 LDPXXXXXXXXXXXXXXXXDSGLRVFLGDESNRDATLSKSNDAQTTGPRQRKPGHLSNST 240
LDP DSGLRVFLGDESNRDATLSKSNDAQTTGPRQRKPGHLSNST
Sbjct: 181 LDPAAKAAAATVLASKLGADSGLRVFLGDESNRDATLSKSNDAQTTGPRQRKPGHLSNST 240
Query: 241 GRTYGPESLGGSYAYDGNEGVTTPNQRTVDHFRGPAGNDGGWLARAAALLVGEDPTQCYA 300
GRTYGPESLGGSYAYDGNEGVTTPNQRTVDHFRGPAGNDGGWLARAAALLVGEDPTQCYA
Sbjct: 241 GRTYGPESLGGSYAYDGNEGVTTPNQRTVDHFRGPAGNDGGWLARAAALLVGEDPTQCYA 300
Query: 301 LICGNCHMHNGLARKEDFAFITYYCPHCNALNGPRQHDEHEMVSPGKETPISHSDGSIXX 360
LICGNCHMHNGLARKEDFAFITYYCPHCNALNGPRQHDEHEMVSPGKETPISHSDGSI
Sbjct: 301 LICGNCHMHNGLARKEDFAFITYYCPHCNALNGPRQHDEHEMVSPGKETPISHSDGSIGH 360
Query: 361 XXXXXXXXXXXXPIVKDLPTVEELPAESSVATNLPSAEELPAESPIANNLPAVEELAAES 420
PIVKDLPTVEELPAESSVATNLPSAEELPAESPIANNLPAVEELAAES
Sbjct: 361 AGANLANSGAGSPIVKDLPTVEELPAESSVATNLPSAEELPAESPIANNLPAVEELAAES 420
Query: 421 PVASSTPAIEELPAEGTVEKASIDHPAS 448
PVASSTPAIEELPAEGTVEKASIDHPAS
Sbjct: 421 PVASSTPAIEELPAEGTVEKASIDHPAS 448
>Os02g0631000 Conserved hypothetical protein
Length = 389
Score = 310 bits (795), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 154/323 (47%), Positives = 207/323 (64%), Gaps = 8/323 (2%)
Query: 41 VWKGIFGRREDVEKLLQALSKEEEAVXXXXXXXXXXXXXXXHNVXXXXXXXXXXXVGYAI 100
+W+ +FG RED EK LQ LSKEE AV N+ + YAI
Sbjct: 33 MWRALFGGREDYEKRLQYLSKEEAAVHARMRRRTQFSRTAVRNLIVLSVLAEVVAIVYAI 92
Query: 101 MTTRSPDLSWQMRATRVLPMFLIPALAALIYSTITSVTKMLDNRDQHTLENLRAERQAKI 160
MTTR+ ++W+MRA RVLPMF++PA++++IYST+ T+ML+ +DQ TLE LRAER+AKI
Sbjct: 93 MTTRNEHITWEMRAIRVLPMFVLPAVSSVIYSTVVKFTRMLERKDQKTLEKLRAERKAKI 152
Query: 161 DELKERTNYYTTQQLIQRYDLDPXXXXXXXXXXXXXXXXDSGLRVFLGDESNRDATLSKS 220
DELKERTNYY TQQLIQ+YDLDP ++GL+V +G+E D+ +++S
Sbjct: 153 DELKERTNYYLTQQLIQKYDLDPAAKAAAASVLASKLGEETGLKVHVGEEPKLDSAVARS 212
Query: 221 NDAQTT---GPRQRKPGHLSNS-TGRTYGPE--SLGGSYAYDGNEGVTTPNQRTVDHFRG 274
ND + + G R RK + S TG T + + G + + G+ P V+HF+G
Sbjct: 213 NDVEISPSEGLRNRKQSNARGSRTGGTTAAQNPAQGAESSLTSSSGLEQPPM-VVEHFQG 271
Query: 275 PAGNDGGWLARAAALLVGEDPTQCYALICGNCHMHNGLARKEDFAFITYYCPHCNALNGP 334
+DGGW+A+ AALLVGEDP+Q YALICGNCHMHNGLARKED+ ITYYCPHC+ALN
Sbjct: 272 SGASDGGWIAKIAALLVGEDPSQSYALICGNCHMHNGLARKEDYPHITYYCPHCHALNTS 331
Query: 335 RQH-DEHEMVSPGKETPISHSDG 356
+Q +H + G+ TP++ +DG
Sbjct: 332 KQSLGQHSGSNSGRSTPVAPADG 354
>Os04g0522750
Length = 345
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 94/293 (32%), Positives = 131/293 (44%), Gaps = 57/293 (19%)
Query: 47 GRREDVEKLLQALSKEEEAVXXXXXXXXXXXXXXXHNVXXXXXXXXXXXVGYAIMTTRSP 106
GR +D E+ LQ LSKEE AV H + + R
Sbjct: 49 GRGDDYERWLQYLSKEEAAV---------------HARLRRSPAVASATSSSSPSSARQ- 92
Query: 107 DLSWQMRATRVLPMFLIPALAALIYSTITSVTKMLDNRDQHTLENLRAERQAKIDELKER 166
S+ + + V F+ + + I+ TK L+ +DQ LE LR ER+AKIDELKER
Sbjct: 93 --SFCLVSQEVHCSFITHS-SVKIFKHGLGDTK-LEQKDQKLLERLREERKAKIDELKER 148
Query: 167 TNYYTTQQLIQRYDLDPXXXXXXXXXXXXXXXXDSGLRVFLGDESNRDATLSKSNDAQ-- 224
TNYY TQ+LIQ+YDLDP DSG R ++ DE+ +++ ++S+ ++
Sbjct: 149 TNYYLTQKLIQKYDLDPAAKAAAASVLATKLGADSGRREYVKDEAKSESSQARSSASEVI 208
Query: 225 -TTGPRQRKPGHLSNSTGRTYGPESLGGSYAYDGNEGVTTPNQRTVDHFRGPAGNDGGWL 283
+ G R RK T S G+ A D N G + + DH
Sbjct: 209 PSNGLRNRK---------HTKAKGSSTGNAADDHNTGQVS--EAVGDHLE---------- 247
Query: 284 ARAAALLVGEDPTQCYALICGNCHMHNGLARKEDFAFITYYCPHCNALNGPRQ 336
A + +VG + +GLARKEDF +TY CPHC+ALN Q
Sbjct: 248 AMEPSRVVGH-------------YQSSGLARKEDFPHVTYCCPHCHALNMSNQ 287
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.130 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,206,663
Number of extensions: 532799
Number of successful extensions: 1688
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1676
Number of HSP's successfully gapped: 3
Length of query: 448
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 344
Effective length of database: 11,605,545
Effective search space: 3992307480
Effective search space used: 3992307480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 158 (65.5 bits)