Os02g0631000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0631000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 40.57 | 0.299 | 10.7 | 0.288 | 0.274 | 3.52 | -0.484 | -7.91 | 0.0631 | 4.07 | 0.09429 | 300 | -- | -- |
| 45.16 | 0.313 | 10.6 | 0.389 | 0.21 | 1.62 | -0.255 | -- | 0.0193 | 2.58 | 0.529 | 179 | -- | -- |
| 41.16 | 0.299 | 10.7 | 0.292 | 0.277 | 3.55 | -- | -7.96 | 0.0662 | 4.6 | 0.06019 | 299 | -- | -- |
| 42.94 | 0.305 | 10.6 | 0.435 | 0.297 | 1.19 | -- | -- | 0.0346 | 5.08 | 1 | 299 | -- | -- |
| 45.24 | 0.313 | 10.7 | 0.304 | -- | 3.52 | -- | -7.97 | 0.0729 | -- | 0.03926 | 301 | -- | -- |
| 48.3 | 0.326 | 10.6 | 0.469 | 0.272 | -- | -0.51 | -- | 0.0269 | 4.24 | -- | -- | -- | -- |
| 49.02 | 0.328 | 10.6 | 0.474 | 0.27 | -- | -- | -- | 0.0296 | 4.39 | -- | -- | -- | -- |
| 47.42 | 0.321 | 10.6 | 0.426 | -- | 1.09 | -- | -- | 0.0553 | -- | 1 | 366 | -- | -- |
| 46.92 | 0.319 | 10.6 | -- | 0.314 | 1.29 | -- | -- | 0.0133 | 5.07 | 1 | 366 | -- | -- |
| 52.93 | 0.34 | 10.6 | 0.485 | -- | -- | -- | -- | 0.0368 | -- | -- | -- | -- | -- |
| 54.94 | 0.347 | 10.6 | -- | 0.279 | -- | -- | -- | -0.0231 | 4.35 | -- | -- | -- | -- |
| 49.6 | 0.328 | 10.6 | -- | -- | 0.962 | -- | -- | 0.0216 | -- | 1.127 | 847 | -- | -- |
| 59.12 | 0.359 | 10.6 | -- | -- | -- | -- | -- | -0.017 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 39.34 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 7 | 16 |
| 4 | 39.45 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 11 | 12 |
| 7 | 39.53 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 9 |
| 10 | 39.57 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 16 | 7 |
| 12 | 39.61 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 7 |
| 14 | 39.67 | radiation | 1.0 | 720 | < th | dose dependent | sin | 19 | NA |
| 21 | 39.95 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 17 | 12 |
| 38 | 40.02 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 17 | 14 |
| 50 | 40.07 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 15 | 14 |
| 57 | 40.10 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 15 | 16 |
| 63 | 40.11 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 17 |
| 81 | 40.13 | radiation | 1.0 | 720 | < th | dose independent | rect. | 7 | 16 |
| 94 | 40.24 | radiation | 1.0 | 720 | < th | dose independent | rect. | 11 | 12 |
| 108 | 40.40 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 22 | 21 |
| 124 | 40.45 | precipitation | 0.1 | 270 | > th | dose independent | sin | 12 | NA |
| 127 | 40.48 | radiation | 30.0 | 4320 | < th | dose dependent | rect. | 24 | 5 |
| 133 | 40.52 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 19 | 23 |
| 136 | 40.53 | precipitation | 0.1 | 270 | < th | dose independent | sin | 12 | NA |
| 139 | 40.53 | precipitation | 0.1 | 270 | < th | dose dependent | sin | 12 | NA |
| 150 | 40.57 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 17 |
| 156 | 40.63 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 159 | 40.66 | radiation | 1.0 | 720 | < th | dose independent | rect. | 16 | 7 |
| 160 | 40.67 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 21 |
| 167 | 40.69 | precipitation | 0.1 | 270 | > th | dose dependent | sin | 11 | NA |
| 171 | 40.69 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 21 | 22 |
| 177 | 40.71 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 180 | 40.72 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 17 | 6 |
| 181 | 40.72 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 17 | 16 |
| 188 | 40.73 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 14 | 18 |
| 205 | 40.77 | radiation | 1.0 | 720 | < th | dose independent | sin | 17 | NA |
| 220 | 40.78 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 13 | 15 |
| 223 | 40.78 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 13 | 15 |
| 226 | 40.80 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 23 |
| 231 | 40.80 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 23 |
| 234 | 40.81 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 7 |
| 238 | 40.82 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 11 | 7 |
| 263 | 40.86 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 9 | 9 |
| 275 | 40.87 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 9 | 9 |
| 319 | 40.91 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 17 | 22 |
| 335 | 40.93 | precipitation | 0.1 | 270 | > th | dose independent | no | NA | NA |
| 336 | 40.93 | precipitation | 0.1 | 270 | < th | dose independent | no | NA | NA |
| 343 | 40.93 | precipitation | 0.1 | 270 | < th | dose dependent | no | NA | NA |
| 410 | 41.02 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 8 | 22 |
| 438 | 41.06 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 451 | 41.09 | precipitation | 0.1 | 270 | > th | dose dependent | no | NA | NA |
| 641 | 41.27 | radiation | 1.0 | 720 | > th | dose independent | rect. | 7 | 12 |
| 656 | 41.28 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 16 | 9 |
| 670 | 41.28 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 16 | 9 |
| 748 | 41.38 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 5 | 18 |
| 764 | 41.41 | humidity | 60.0 | 720 | > th | dose dependent | rect. | 19 | 2 |
| 797 | 41.43 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 16 | 22 |
| 801 | 41.43 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 817 | 41.45 | radiation | 1.0 | 720 | > th | dose dependent | rect. | 16 | 3 |
| 852 | 41.46 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 907 | 41.52 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 932 | 41.54 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 8 | 6 |
| 964 | 41.56 | radiation | 1.0 | 1440 | > th | dose independent | sin | 19 | NA |