BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0631000 Os02g0631000|AK068667
(389 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0631000 Conserved hypothetical protein 692 0.0
Os04g0672900 Conserved hypothetical protein 317 9e-87
Os04g0522750 204 1e-52
>Os02g0631000 Conserved hypothetical protein
Length = 389
Score = 692 bits (1787), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/389 (88%), Positives = 345/389 (88%)
Query: 1 MASSPEAAAVXXXXXXXXXXXXXXXXXXVLGRMWRALFGGREDYEKRLQYLSKEEAAVHA 60
MASSPEAAAV VLGRMWRALFGGREDYEKRLQYLSKEEAAVHA
Sbjct: 1 MASSPEAAAVGEEEKGKGKKEEGRRGGGVLGRMWRALFGGREDYEKRLQYLSKEEAAVHA 60
Query: 61 RMRRRTQFSRTAVRNLIVLSVLAEVVAIVYAIMTTRNEHITWEMRAIRVLPMFVLPAVSS 120
RMRRRTQFSRTAVRNLIVLSVLAEVVAIVYAIMTTRNEHITWEMRAIRVLPMFVLPAVSS
Sbjct: 61 RMRRRTQFSRTAVRNLIVLSVLAEVVAIVYAIMTTRNEHITWEMRAIRVLPMFVLPAVSS 120
Query: 121 VIYSTVVKFTRMLERKDQKTLEKLRAERKAKIDELKERTNYYLTQQLIQKYDLDPXXXXX 180
VIYSTVVKFTRMLERKDQKTLEKLRAERKAKIDELKERTNYYLTQQLIQKYDLDP
Sbjct: 121 VIYSTVVKFTRMLERKDQKTLEKLRAERKAKIDELKERTNYYLTQQLIQKYDLDPAAKAA 180
Query: 181 XXXXXXXXXGEETGLKVHVGEEPKLDSAVARSNDVEISPSEGLRNRKQSNARGSRTGGTT 240
GEETGLKVHVGEEPKLDSAVARSNDVEISPSEGLRNRKQSNARGSRTGGTT
Sbjct: 181 AASVLASKLGEETGLKVHVGEEPKLDSAVARSNDVEISPSEGLRNRKQSNARGSRTGGTT 240
Query: 241 AAQNPAQGAESSLTSSSGLEQPPMVVEHFQGSGASDGGWIAKIAALLVGEDPSQSYALIC 300
AAQNPAQGAESSLTSSSGLEQPPMVVEHFQGSGASDGGWIAKIAALLVGEDPSQSYALIC
Sbjct: 241 AAQNPAQGAESSLTSSSGLEQPPMVVEHFQGSGASDGGWIAKIAALLVGEDPSQSYALIC 300
Query: 301 GNCHMHNGLARKEDYPHITYYCPHCHALNTSKQSLGQHSGSNSGRSTPVAPADGIXXXXX 360
GNCHMHNGLARKEDYPHITYYCPHCHALNTSKQSLGQHSGSNSGRSTPVAPADGI
Sbjct: 301 GNCHMHNGLARKEDYPHITYYCPHCHALNTSKQSLGQHSGSNSGRSTPVAPADGISASSS 360
Query: 361 XXXXXXXNMTTIQELKNEENTEKQEVQAS 389
NMTTIQELKNEENTEKQEVQAS
Sbjct: 361 VVESEVSNMTTIQELKNEENTEKQEVQAS 389
>Os04g0672900 Conserved hypothetical protein
Length = 448
Score = 317 bits (812), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 164/327 (50%), Positives = 227/327 (69%), Gaps = 8/327 (2%)
Query: 29 VLGRMWRALFGGREDYEKRLQYLSKEEAAVHARMRRRTQFSRTAVRNLIVLSVLAEVVAI 88
++ R+W+ +FG RED EK LQ LSKEE AV +R+RRR + SR + N++ ++ E+ A+
Sbjct: 37 LVSRVWKGIFGRREDVEKLLQALSKEEEAVRSRLRRRARASRQSAHNVLAIAAALEIAAV 96
Query: 89 VYAIMTTRNEHITWEMRAIRVLPMFVLPAVSSVIYSTVVKFTRMLERKDQKTLEKLRAER 148
YAIMTTR+ ++W+MRA RVLPMF++PA++++IYST+ T+ML+ +DQ TLE LRAER
Sbjct: 97 GYAIMTTRSPDLSWQMRATRVLPMFLIPALAALIYSTITSVTKMLDNRDQHTLENLRAER 156
Query: 149 KAKIDELKERTNYYLTQQLIQKYDLDPXXXXXXXXXXXXXXGEETGLKVHVGEEPKLDSA 208
+AKIDELKERTNYY TQQLIQ+YDLDP G ++GL+V +G+E D+
Sbjct: 157 QAKIDELKERTNYYTTQQLIQRYDLDPAAKAAAATVLASKLGADSGLRVFLGDESNRDAT 216
Query: 209 VARSNDVEISPSEGLRNRKQSNARGSRTGGTTAAQNPAQGAESSLTSSSGLEQPPM-VVE 267
+++SND + + G R RK + S TG T + + G + + G+ P V+
Sbjct: 217 LSKSNDAQTT---GPRQRKPGHLSNS-TGRTYGPE--SLGGSYAYDGNEGVTTPNQRTVD 270
Query: 268 HFQGSGASDGGWIAKIAALLVGEDPSQSYALICGNCHMHNGLARKEDYPHITYYCPHCHA 327
HF+G +DGGW+A+ AALLVGEDP+Q YALICGNCHMHNGLARKED+ ITYYCPHC+A
Sbjct: 271 HFRGPAGNDGGWLARAAALLVGEDPTQCYALICGNCHMHNGLARKEDFAFITYYCPHCNA 330
Query: 328 LNTSKQSLGQHSGSNSGRSTPVAPADG 354
LN +Q +H + G+ TP++ +DG
Sbjct: 331 LNGPRQH-DEHEMVSPGKETPISHSDG 356
>Os04g0522750
Length = 345
Score = 204 bits (518), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 135/347 (38%), Positives = 179/347 (51%), Gaps = 60/347 (17%)
Query: 36 ALFGGR-EDYEKRLQYLSKEEAAVHARMRRRTQFSRTAVRNLIVLSVLAEVVAIVYAIMT 94
++F GR +DYE+ LQYLSKEEAAVHAR+RR + + + + +
Sbjct: 45 SVFAGRGDDYERWLQYLSKEEAAVHARLRRSPAVASATSSSSPSSARQS-------FCLV 97
Query: 95 TRNEHITWEMRAIRVLPMFVLPAVSSVIYSTVVKFTRMLERKDQKTLEKLRAERKAKIDE 154
++ H ++ + S I+ + T+ LE+KDQK LE+LR ERKAKIDE
Sbjct: 98 SQEVHCSF------------ITHSSVKIFKHGLGDTK-LEQKDQKLLERLREERKAKIDE 144
Query: 155 LKERTNYYLTQQLIQKYDLDPXXXXXXXXXXXXXXGEETGLKVHVGEEPKLDSAVARSND 214
LKERTNYYLTQ+LIQKYDLDP G ++G + +V +E K +S+ ARS+
Sbjct: 145 LKERTNYYLTQKLIQKYDLDPAAKAAAASVLATKLGADSGRREYVKDEAKSESSQARSSA 204
Query: 215 VEISPSEGLRNRKQSNARGSRTGGTTAAQNPAQGAESSLTSSSGLEQPPMVVEHFQGSGA 274
E+ PS GLRNRK + A+GS TG N Q +E+ +E P VV H+Q S
Sbjct: 205 SEVIPSNGLRNRKHTKAKGSSTGNAADDHNTGQVSEAVGDHLEAME-PSRVVGHYQSS-- 261
Query: 275 SDGGWIAKIAALLVGEDPSQSYALICGNCHMHNGLARKEDYPHITYYCPHCHALNTSKQS 334
GLARKED+PH+TY CPHCHALN S Q+
Sbjct: 262 ---------------------------------GLARKEDFPHVTYCCPHCHALNMSNQT 288
Query: 335 LGQHSGSNSGRSTPVAPADGIXXXXXXXXXXXXNMTTIQELKNEENT 381
+G+ SGSNSG+ T A G N T QE+ EEN+
Sbjct: 289 IGRWSGSNSGQLTSSAQVSGT---NPVADNELGNQTEGQEIYVEENS 332
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.128 0.361
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,141,216
Number of extensions: 438957
Number of successful extensions: 1446
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1444
Number of HSP's successfully gapped: 4
Length of query: 389
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 286
Effective length of database: 11,657,759
Effective search space: 3334119074
Effective search space used: 3334119074
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 157 (65.1 bits)