Os04g0672900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0672900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30.1 | 0.258 | 10.1 | 0.341 | 0.369 | -0.812 | -0.302 | 1.13 | 0.189 | 5.25 | 15.65 | 90 | -- | -- |
| 31.09 | 0.26 | 10.2 | 0.173 | 0.38 | -0.736 | -0.516 | -- | 0.143 | 5.03 | 16.21 | 89 | -- | -- |
| 30.27 | 0.256 | 10.1 | 0.379 | 0.367 | -0.795 | -- | 1.36 | 0.203 | 5.25 | 16.16 | 99 | -- | -- |
| 31.77 | 0.263 | 10.2 | 0.17 | 0.368 | -0.825 | -- | -- | 0.145 | 5.31 | 14.4 | 82 | -- | -- |
| 35.03 | 0.276 | 10.1 | 0.493 | -- | -1.08 | -- | 1.5 | 0.262 | -- | 16.92 | 202 | -- | -- |
| 37.92 | 0.289 | 10.2 | -0.00273 | 0.581 | -- | -0.418 | -- | 0.0234 | 4.4 | -- | -- | -- | -- |
| 38.39 | 0.29 | 10.2 | 0.000788 | 0.579 | -- | -- | -- | 0.0257 | 4.42 | -- | -- | -- | -- |
| 36.89 | 0.283 | 10.2 | 0.251 | -- | -1.13 | -- | -- | 0.192 | -- | 14.84 | 162 | -- | -- |
| 32.44 | 0.265 | 10.2 | -- | 0.392 | -0.738 | -- | -- | 0.113 | 5.13 | 13.47 | 82 | -- | -- |
| 56.35 | 0.351 | 10.2 | 0.0235 | -- | -- | -- | -- | 0.041 | -- | -- | -- | -- | -- |
| 38.39 | 0.29 | 10.2 | -- | 0.579 | -- | -- | -- | 0.0256 | 4.42 | -- | -- | -- | -- |
| 36.37 | 0.281 | 10.2 | -- | -- | -0.856 | -- | -- | 0.112 | -- | 24.2 | 97 | -- | -- |
| 56.36 | 0.35 | 10.2 | -- | -- | -- | -- | -- | 0.0383 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 26.77 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 16 |
| 3 | 27.01 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 14 |
| 9 | 27.22 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 16 |
| 15 | 27.53 | temperature | 10 | 270 | > th | dose dependent | sin | 4 | NA |
| 17 | 27.56 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 10 |
| 18 | 27.58 | temperature | 30 | 90 | < th | dose dependent | sin | 0 | NA |
| 29 | 27.68 | temperature | 30 | 270 | < th | dose dependent | sin | 3 | NA |
| 41 | 27.88 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 15 |
| 50 | 28.01 | temperature | 10 | 90 | > th | dose dependent | sin | 1 | NA |
| 128 | 28.69 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 8 |
| 132 | 28.70 | temperature | 15 | 270 | > th | dose dependent | rect. | 7 | 9 |
| 142 | 28.76 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 22 |
| 231 | 29.15 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 22 |
| 290 | 29.34 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 8 |
| 348 | 29.49 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 10 |
| 433 | 29.68 | temperature | 25 | 10 | > th | dose dependent | rect. | 9 | 13 |
| 445 | 29.70 | temperature | 25 | 10 | > th | dose dependent | rect. | 7 | 15 |
| 484 | 29.77 | temperature | 25 | 10 | > th | dose dependent | rect. | 9 | 20 |
| 529 | 29.83 | temperature | 25 | 10 | > th | dose dependent | rect. | 7 | 17 |
| 546 | 29.85 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 9 |
| 551 | 29.85 | temperature | 25 | 10 | > th | dose dependent | rect. | 9 | 17 |
| 557 | 29.85 | temperature | 20 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 559 | 29.86 | temperature | 25 | 10 | > th | dose dependent | rect. | 7 | 19 |
| 596 | 29.90 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 22 |
| 614 | 29.92 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 12 |
| 741 | 30.04 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 9 |
| 819 | 30.11 | temperature | 15 | 90 | > th | dose dependent | no | NA | NA |
| 836 | 30.12 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 15 |
| 842 | 30.12 | temperature | 25 | 90 | > th | dose dependent | rect. | 1 | 21 |
| 925 | 30.19 | temperature | 25 | 90 | > th | dose dependent | no | NA | NA |
| 954 | 30.21 | temperature | 20 | 720 | > th | dose independent | sin | 8 | NA |