BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0671800 Os04g0671800|AK070857
(711 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0671800 Zinc finger, CCCH-type domain containing protein 1211 0.0
Os05g0176400 Zinc finger, CCCH-type domain containing protein 124 3e-28
>Os04g0671800 Zinc finger, CCCH-type domain containing protein
Length = 711
Score = 1211 bits (3132), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 596/690 (86%), Positives = 596/690 (86%)
Query: 22 RPLAPEEEALRRNTDCVYFLASPLTCKKGNECDFRHSDNARMNPRDCWYWLNSNCLNPKC 81
RPLAPEEEALRRNTDCVYFLASPLTCKKGNECDFRHSDNARMNPRDCWYWLNSNCLNPKC
Sbjct: 22 RPLAPEEEALRRNTDCVYFLASPLTCKKGNECDFRHSDNARMNPRDCWYWLNSNCLNPKC 81
Query: 82 PFRHPPIDGMFGAPTTGMPAVSSHYAPFNSGKQLVPCYYFKKGNCLKGDRCAFYHGPQSV 141
PFRHPPIDGMFGAPTTGMPAVSSHYAPFNSGKQLVPCYYFKKGNCLKGDRCAFYHGPQSV
Sbjct: 82 PFRHPPIDGMFGAPTTGMPAVSSHYAPFNSGKQLVPCYYFKKGNCLKGDRCAFYHGPQSV 141
Query: 142 GNNPSEQVVKVSSLPLEQLQTQKNDLLGIKDSVQSTNSIQHGAPITNERGKTAVDRSTVN 201
GNNPSEQVVKVSSLPLEQLQTQKNDLLGIKDSVQSTNSIQHGAPITNERGKTAVDRSTVN
Sbjct: 142 GNNPSEQVVKVSSLPLEQLQTQKNDLLGIKDSVQSTNSIQHGAPITNERGKTAVDRSTVN 201
Query: 202 SARTATVAIPVASNAMSCPKSEKVKSSTPAALKESFTTSSGGDHPECYQNHFPMDSDPVR 261
SARTATVAIPVASNAMSCPKSEKVKSSTPAALKESFTTSSGGDHPECYQNHFPMDSDPVR
Sbjct: 202 SARTATVAIPVASNAMSCPKSEKVKSSTPAALKESFTTSSGGDHPECYQNHFPMDSDPVR 261
Query: 262 DWNQSYEMPPADDLPQNSREADELLGESSPGFDVLVDNDADGAAYLHDEDFGGDMYPVED 321
DWNQSYEMPPADDLPQNSREADELLGESSPGFDVLVDNDADGAAYLHDEDFGGDMYPVED
Sbjct: 262 DWNQSYEMPPADDLPQNSREADELLGESSPGFDVLVDNDADGAAYLHDEDFGGDMYPVED 321
Query: 322 YEYAPADFDVRAHHERERFNGMDEQDQMGHMYDGYXXXXXXXXXXXXXXPFHSERRFLQR 381
YEYAPADFDVRAHHERERFNGMDEQDQMGHMYDGY PFHSERRFLQR
Sbjct: 322 YEYAPADFDVRAHHERERFNGMDEQDQMGHMYDGYERKRRRSSERSMERPFHSERRFLQR 381
Query: 382 DRDRVEMDGSDXXXXXXXXXINESSLAISPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 441
DRDRVEMDGSD INESSLAISP
Sbjct: 382 DRDRVEMDGSDLRHRLRRRRINESSLAISPERNGEQRRRDERYRERAHGHRSHRDHHQSS 441
Query: 442 XXXTLSSRLQGRIKLPGRSPDRVDTXXXXXXXXXXXXXXXXXXXXTEFQGTRHREAGQHE 501
TLSSRLQGRIKLPGRSPDRVDT TEFQGTRHREAGQHE
Sbjct: 442 RGSTLSSRLQGRIKLPGRSPDRVDTRSEKERDRRRLRDRLSPVRRTEFQGTRHREAGQHE 501
Query: 502 EQTQRRSSELALGSRNADGQHLTKDVPDSHNFPHRKNSRDSSKANGSVEPEASLDFEGPK 561
EQTQRRSSELALGSRNADGQHLTKDVPDSHNFPHRKNSRDSSKANGSVEPEASLDFEGPK
Sbjct: 502 EQTQRRSSELALGSRNADGQHLTKDVPDSHNFPHRKNSRDSSKANGSVEPEASLDFEGPK 561
Query: 562 PLSVILQRKREAAWANGTSACSPKQDKSAEVSHRQASLAEAEKEGDNIISSDEYKSGSGD 621
PLSVILQRKREAAWANGTSACSPKQDKSAEVSHRQASLAEAEKEGDNIISSDEYKSGSGD
Sbjct: 562 PLSVILQRKREAAWANGTSACSPKQDKSAEVSHRQASLAEAEKEGDNIISSDEYKSGSGD 621
Query: 622 EEFRDEGHIPVEGHGQSSSHGDKLEAEDIIEVDPVENQDADNYDQREGESYYEPIEGQDY 681
EEFRDEGHIPVEGHGQSSSHGDKLEAEDIIEVDPVENQDADNYDQREGESYYEPIEGQDY
Sbjct: 622 EEFRDEGHIPVEGHGQSSSHGDKLEAEDIIEVDPVENQDADNYDQREGESYYEPIEGQDY 681
Query: 682 KSXXXXXXXXXXXXXXXXXXFARKVGVVFS 711
KS FARKVGVVFS
Sbjct: 682 KSDDENAYEDDDEEYDDDDDFARKVGVVFS 711
>Os05g0176400 Zinc finger, CCCH-type domain containing protein
Length = 493
Score = 124 bits (310), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 99/333 (29%), Positives = 147/333 (44%), Gaps = 67/333 (20%)
Query: 32 RRNTDCVYFLASPLTCKKGNECDFRHSDNARMNPRDCWYWLNSNCLNPKCPFRHPPIDGM 91
R NTDCVYFLASP TC KG++C++RH+D AR N R+CWYW NC+NP C FRHPP++ +
Sbjct: 15 RCNTDCVYFLASPFTCTKGSKCEYRHADGARFNRRNCWYWFKGNCVNPSCTFRHPPLENL 74
Query: 92 FGAPTTGMPAVSSHYAPFNSGKQLVPCYYFKKGNCLKGDRCAFYHGPQSVGNNPSEQVVK 151
+ P S K PCY++ +C KGD C + H P +
Sbjct: 75 NKTKSLADPLSLCS----TSVKAANPCYFYYNSHCSKGDNCPYLHEPLT----------- 119
Query: 152 VSSLPLEQLQTQKNDLLGIKDSVQSTNSIQHGAPITNERGKTAVDRSTVNSARTAT--VA 209
ND +G ++N + + +E + + D T T+
Sbjct: 120 ------------SNDAVGTSCKATTSNPAVSKSYVGDEMVEESKDTITNPCQDTSCHIKE 167
Query: 210 IPVASNAMSCPKSEKVKSSTPAALKESFTTSSGGDHPECYQNHFPMDSDPVRDWNQSYEM 269
+PV+ N P+ + + A+ + TS+ D M V D N
Sbjct: 168 VPVSIN----PEFGEAE-----AVSGALETSTDIDE--------YMKCSAVSDLN----- 205
Query: 270 PPADDLPQNSREADELLGESSPGFDVLVDNDADGAAYLHDEDFGGDMYPVEDYEYA---P 326
+ D + E DE +SSPGFDVLVD+ + L + V EY P
Sbjct: 206 --SGDSTMDHTEQDER--DSSPGFDVLVDDCLSNKSDLEHQLTTESDNKVLHAEYGIRDP 261
Query: 327 ADFDVRAHHERERFN------GMDEQDQMGHMY 353
+D+ +H+ E +N G+D D+ G++Y
Sbjct: 262 VLYDM-YYHDPEYYNYEPEFCGLD--DRQGYLY 291
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.312 0.130 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 22,862,828
Number of extensions: 1015319
Number of successful extensions: 2689
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 2684
Number of HSP's successfully gapped: 2
Length of query: 711
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 603
Effective length of database: 11,396,689
Effective search space: 6872203467
Effective search space used: 6872203467
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 160 (66.2 bits)