Os05g0176400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, CCCH-type domain containing protein.
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Os05g0176400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, CCCH-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 189.97 | 0.648 | 3.53 | 0.106 | 0.505 | 1.48 | 0.473 | 1.42 | -0.0552 | 22.2 | 13.79 | 1707 | -- | -- |
| 192.01 | 0.645 | 3.57 | -0.0932 | 0.401 | 1.37 | 0.566 | -- | -0.103 | 22.6 | 17.01 | 1855 | -- | -- |
| 190.82 | 0.643 | 3.53 | 0.0875 | 0.505 | 1.48 | -- | 1.42 | -0.0559 | 22 | 13.35 | 1710 | -- | -- |
| 191.01 | 0.644 | 3.56 | -0.158 | 0.377 | 1.16 | -- | -- | -0.117 | 21.5 | 21.19 | 2243 | -- | -- |
| 193.33 | 0.648 | 3.51 | 0.124 | -- | 1.58 | -- | 1.59 | -0.0531 | -- | 17.04 | 858 | -- | -- |
| 228.31 | 0.708 | 3.51 | 0.272 | 0.548 | -- | 0.521 | -- | 0.136 | 22 | -- | -- | -- | -- |
| 229.34 | 0.709 | 3.51 | 0.253 | 0.549 | -- | -- | -- | 0.136 | 21.8 | -- | -- | -- | -- |
| 191.81 | 0.645 | 3.55 | -0.125 | -- | 1.4 | -- | -- | -0.113 | -- | 22.2 | 881 | -- | -- |
| 191.53 | 0.645 | 3.56 | -- | 0.378 | 1.1 | -- | -- | -0.0822 | 21.5 | 21.96 | 2245 | -- | -- |
| 247.34 | 0.735 | 3.49 | 0.259 | -- | -- | -- | -- | 0.136 | -- | -- | -- | -- | -- |
| 231.02 | 0.711 | 3.52 | -- | 0.55 | -- | -- | -- | 0.108 | 21.9 | -- | -- | -- | -- |
| 192.21 | 0.646 | 3.55 | -- | -- | 1.36 | -- | -- | -0.0888 | -- | 22.2 | 881 | -- | -- |
| 249.1 | 0.737 | 3.5 | -- | -- | -- | -- | -- | 0.107 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 184.38 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 2 |
| 10 | 185.88 | temperature | 30 | 1440 | < th | dose dependent | rect. | 22 | 1 |
| 14 | 186.08 | temperature | 10 | 1440 | > th | dose dependent | rect. | 22 | 1 |
| 19 | 186.24 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 9 |
| 32 | 186.54 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 18 |
| 56 | 186.85 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 16 |
| 59 | 186.91 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 9 |
| 64 | 186.95 | temperature | 20 | 1440 | > th | dose dependent | sin | 14 | NA |
| 93 | 187.16 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 13 |
| 136 | 187.37 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 8 |
| 161 | 187.50 | temperature | 10 | 1440 | > th | dose dependent | sin | 14 | NA |
| 223 | 187.81 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 14 |
| 283 | 188.07 | temperature | 30 | 1440 | < th | dose dependent | sin | 14 | NA |
| 405 | 188.57 | wind | 5 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 448 | 188.77 | temperature | 15 | 720 | > th | dose dependent | rect. | 8 | 21 |
| 470 | 188.86 | wind | 5 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 488 | 188.93 | temperature | 25 | 1440 | < th | dose independent | rect. | 16 | 8 |
| 489 | 188.93 | wind | 5 | 43200 | > th | dose independent | rect. | 20 | 21 |
| 564 | 189.25 | wind | 5 | 43200 | < th | dose independent | rect. | 20 | 20 |
| 571 | 189.27 | wind | 5 | 43200 | > th | dose independent | rect. | 7 | 8 |
| 592 | 189.36 | temperature | 25 | 1440 | > th | dose independent | rect. | 16 | 8 |
| 615 | 189.44 | wind | 5 | 43200 | < th | dose independent | rect. | 7 | 8 |
| 657 | 189.54 | temperature | 25 | 1440 | < th | dose independent | rect. | 18 | 5 |
| 686 | 189.65 | wind | 5 | 43200 | > th | dose independent | rect. | 22 | 18 |
| 743 | 189.82 | wind | 5 | 43200 | < th | dose independent | rect. | 22 | 18 |
| 770 | 189.90 | temperature | 25 | 1440 | < th | dose independent | rect. | 20 | 2 |
| 775 | 189.91 | wind | 5 | 43200 | > th | dose independent | rect. | 2 | 14 |
| 840 | 190.13 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 22 |
| 841 | 190.14 | wind | 5 | 43200 | > th | dose independent | sin | 3 | NA |
| 867 | 190.17 | temperature | 20 | 720 | > th | dose dependent | rect. | 16 | 23 |
| 904 | 190.28 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 3 |
| 950 | 190.35 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 23 |
| 990 | 190.48 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 991 | 190.49 | wind | 5 | 43200 | < th | dose independent | sin | 3 | NA |
| 999 | 190.50 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 1 |