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Os04g0671800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, CCCH-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.7 (0.0159) R2 : 0.295
β1 : 0.788 (0.0581) R2dD : 0.295 R2D : 0.24
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.173 (0.0339) R2dN8 : 0.0543 R2N8 : -0.000328
σ : 0.298
deviance : 40.6
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
22.18 0.221 11.7 0.832 0.35 0.539 -0.542 -0.346 0.206 9.18 0.1803 109 -- --
22.49 0.221 11.7 0.823 0.351 0.539 -0.218 -- 0.2 9.17 0.187 111 -- --
22.62 0.221 11.7 0.81 0.345 0.542 -- -0.0378 0.205 9.35 0.19 115 -- --
22.62 0.222 11.7 0.809 0.343 0.539 -- -- 0.205 9.32 0.18 115 -- --
25.49 0.235 11.7 0.871 -- 0.516 -- -0.253 0.24 -- 0.1795 468 -- --
26.51 0.241 11.7 0.765 0.495 -- -0.0788 -- 0.16 2.93 -- -- -- --
26.53 0.241 11.7 0.767 0.494 -- -- -- 0.161 2.91 -- -- -- --
25.39 0.235 11.7 0.817 -- 0.497 -- -- 0.173 -- 0.2128 444 -- --
40.17 0.295 11.7 -- 0.37 0.557 -- -- 0.178 9.36 0.23 110 -- --
40.6 0.298 11.7 0.788 -- -- -- -- 0.173 -- -- -- -- --
42.01 0.303 11.8 -- 0.509 -- -- -- 0.0753 2.93 -- -- -- --
42.81 0.305 11.7 -- -- 0.506 -- -- 0.116 -- 5.17 447 -- --
56.96 0.352 11.8 -- -- -- -- -- 0.086 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 22.16 radiation 10.0 720 < th dose dependent rect. 16 3
3 22.23 radiation 1.0 720 < th dose dependent rect. 24 19
5 22.35 temperature 10.0 10 > th dose dependent rect. 5 21
8 22.39 temperature 20.0 90 > th dose independent rect. 5 13
11 22.44 radiation 1.0 90 < th dose dependent rect. 15 15
14 22.47 temperature 10.0 720 > th dose dependent rect. 5 2
15 22.48 temperature 15.0 4320 > th dose independent rect. 7 1
17 22.50 radiation 1.0 90 < th dose dependent rect. 17 13
20 22.55 radiation 1.0 90 < th dose dependent rect. 15 20
28 22.60 humidity 50.0 90 > th dose dependent rect. 18 11
33 22.61 radiation 1.0 90 < th dose dependent rect. 10 20
37 22.62 radiation 1.0 90 < th dose dependent rect. 17 18
44 22.64 temperature 20.0 270 > th dose dependent rect. 5 1
49 22.65 radiation 1.0 720 < th dose independent rect. 18 1
50 22.65 temperature 10.0 90 > th dose dependent rect. 5 13
51 22.65 radiation 1.0 90 < th dose dependent rect. 17 23
79 22.76 radiation 1.0 720 < th dose independent rect. 24 19
87 22.77 radiation 1.0 90 < th dose dependent no NA NA
88 22.77 humidity 50.0 720 > th dose dependent rect. 18 1
91 22.79 radiation 1.0 90 < th dose independent rect. 15 15
97 22.81 radiation 1.0 90 < th dose independent rect. 17 13
99 22.81 humidity 50.0 90 > th dose dependent rect. 15 14
114 22.85 radiation 1.0 720 < th dose dependent rect. 24 17
119 22.88 temperature 20.0 270 > th dose independent rect. 5 2
121 22.88 radiation 10.0 720 < th dose dependent rect. 16 11
124 22.89 radiation 1.0 720 > th dose independent rect. 12 19
132 22.92 temperature 10.0 270 > th dose dependent rect. 3 21
134 22.93 temperature 20.0 10 > th dose independent rect. 5 14
135 22.93 radiation 1.0 90 < th dose independent rect. 10 20
142 22.94 temperature 10.0 10 > th dose dependent rect. 5 14
143 22.94 radiation 10.0 720 < th dose dependent rect. 14 14
157 22.97 radiation 1.0 90 < th dose dependent sin 10 NA
166 23.02 radiation 1.0 90 < th dose independent sin 11 NA
188 23.07 atmosphere 1010.0 90 < th dose independent rect. 5 13
196 23.09 radiation 1.0 90 < th dose independent rect. 15 20
203 23.10 radiation 10.0 270 < th dose independent rect. 5 2
204 23.10 radiation 20.0 90 < th dose independent rect. 5 5
207 23.10 radiation 1.0 90 < th dose independent rect. 17 23
210 23.11 wind 7.0 90 < th dose independent rect. 5 13
220 23.13 radiation 1.0 90 < th dose independent rect. 17 18
236 23.16 radiation 1.0 90 > th dose independent rect. 17 23
239 23.16 humidity 70.0 90 > th dose dependent rect. 10 19
243 23.18 temperature 15.0 90 > th dose independent rect. 5 21
252 23.19 atmosphere 1010.0 90 < th dose independent rect. 5 20
267 23.22 temperature 15.0 720 > th dose independent rect. 5 10
289 23.25 humidity 80.0 10 > th dose independent rect. 6 5
296 23.26 radiation 1.0 90 < th dose independent no NA NA
297 23.26 atmosphere 1010.0 720 < th dose independent rect. 5 2
307 23.27 radiation 1.0 90 > th dose independent no NA NA
308 23.27 radiation 1.0 90 > th dose independent rect. 4 15
381 23.30 temperature 15.0 720 > th dose independent rect. 3 14
399 23.31 temperature 15.0 10 > th dose dependent rect. 5 17
401 23.32 temperature 20.0 10 > th dose dependent rect. 5 4
402 23.32 radiation 30.0 10 < th dose dependent rect. 6 5
405 23.33 radiation 1.0 720 > th dose independent rect. 12 5
408 23.33 wind 1.0 30 > th dose dependent rect. 6 1
413 23.34 radiation 1.0 90 > th dose independent sin 10 NA
429 23.36 radiation 10.0 10 < th dose independent rect. 6 4
431 23.36 humidity 90.0 30 < th dose dependent rect. 6 1
436 23.36 radiation 1.0 90 < th dose dependent rect. 22 23
439 23.37 radiation 1.0 720 < th dose independent rect. 8 11
447 23.38 humidity 70.0 720 > th dose independent rect. 17 2
448 23.38 precipitation 0.1 14400 > th dose independent rect. 5 2
450 23.38 precipitation 0.1 14400 > th dose dependent rect. 5 2
455 23.39 precipitation 0.1 14400 < th dose independent rect. 5 2
461 23.39 atmosphere 1015.0 30 < th dose dependent rect. 6 1
462 23.39 radiation 1.0 10 > th dose dependent rect. 6 1
463 23.39 precipitation 0.1 14400 < th dose dependent rect. 5 2
492 23.41 radiation 1.0 720 < th dose dependent rect. 8 11
502 23.43 wind 1.0 30 < th dose independent rect. 6 1
514 23.44 wind 7.0 90 < th dose independent rect. 18 11
524 23.45 radiation 20.0 30 < th dose dependent rect. 6 1
535 23.46 humidity 80.0 720 < th dose independent rect. 12 3
537 23.46 radiation 1.0 90 > th dose independent rect. 17 14
573 23.48 radiation 1.0 90 > th dose independent rect. 5 2
604 23.50 temperature 15.0 720 > th dose independent rect. 19 22
609 23.51 atmosphere 1010.0 30 < th dose independent rect. 6 1
621 23.52 temperature 20.0 10 > th dose independent rect. 5 11
622 23.52 radiation 1.0 90 > th dose independent rect. 11 23
632 23.53 humidity 60.0 90 > th dose independent rect. 18 11
639 23.53 wind 9.0 90 < th dose dependent rect. 5 13
681 23.55 temperature 15.0 720 > th dose independent rect. 13 18
687 23.56 humidity 50.0 720 > th dose independent rect. 17 2
691 23.56 precipitation 0.1 90 < th dose independent rect. 5 13
700 23.56 precipitation 0.1 90 < th dose dependent rect. 5 13
702 23.56 temperature 30.0 10 < th dose dependent rect. 10 20
704 23.57 wind 1.0 10 > th dose independent rect. 6 1
705 23.57 wind 9.0 4320 < th dose independent rect. 7 1
709 23.57 temperature 15.0 720 > th dose independent rect. 19 14
723 23.58 temperature 30.0 90 < th dose independent rect. 18 11
734 23.59 temperature 15.0 720 > th dose independent rect. 21 10
736 23.59 radiation 1.0 720 < th dose independent rect. 8 20
758 23.61 radiation 1.0 10 > th dose independent rect. 6 1
759 23.61 radiation 20.0 720 < th dose independent rect. 21 10
764 23.61 humidity 60.0 90 > th dose dependent rect. 5 5
776 23.62 atmosphere 1005.0 10 > th dose independent rect. 6 1
789 23.63 humidity 80.0 90 > th dose independent rect. 6 1
790 23.63 humidity 90.0 10 < th dose independent rect. 6 1
795 23.63 precipitation 0.1 30 < th dose independent rect. 7 23
799 23.63 precipitation 0.1 30 < th dose dependent rect. 7 23
805 23.64 humidity 90.0 30 < th dose independent rect. 12 19
814 23.65 wind 5.0 30 < th dose independent rect. 6 1
818 23.65 temperature 10.0 30 > th dose independent rect. 6 1
824 23.65 temperature 30.0 30 < th dose independent rect. 6 1
825 23.65 temperature 30.0 1440 < th dose independent rect. 7 1
830 23.65 humidity 50.0 30 > th dose independent rect. 6 1
833 23.65 humidity 50.0 1440 > th dose independent rect. 7 1
839 23.65 atmosphere 995.0 1440 > th dose independent rect. 7 1
845 23.65 precipitation 0.1 30 < th dose independent rect. 6 1
852 23.65 humidity 90.0 30 < th dose independent rect. 12 21
853 23.65 temperature 10.0 30 > th dose independent rect. 7 23
854 23.65 temperature 10.0 1440 > th dose independent rect. 8 23
857 23.65 radiation 1.0 10 < th dose dependent sin 5 NA
858 23.65 precipitation 0.1 30 < th dose dependent rect. 6 1
897 23.67 wind 9.0 720 < th dose independent rect. 9 10
904 23.67 temperature 10.0 720 > th dose dependent rect. 12 4
920 23.68 atmosphere 995.0 30 > th dose independent rect. 7 23
928 23.68 radiation 1.0 90 < th dose dependent rect. 1 23
930 23.69 atmosphere 1010.0 90 < th dose independent rect. 5 10
931 23.69 radiation 10.0 720 < th dose independent rect. 17 10
933 23.69 atmosphere 995.0 90 > th dose independent rect. 18 11
958 23.70 temperature 10.0 90 > th dose independent rect. 18 11
960 23.70 radiation 20.0 90 < th dose independent rect. 18 11
965 23.70 radiation 1.0 90 > th dose independent rect. 17 16
978 23.71 wind 9.0 720 < th dose independent rect. 7 14
979 23.71 radiation 10.0 90 < th dose independent rect. 5 21
982 23.71 humidity 50.0 30 > th dose dependent rect. 6 1
993 23.72 temperature 20.0 10 > th dose independent rect. 2 3
996 23.72 wind 1.0 720 > th dose independent rect. 9 10