BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0670800 Os04g0670800|AK072097
         (331 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0670800  UAS domain containing protein                       662   0.0  
Os02g0640700  UBX domain containing protein                       123   1e-28
Os07g0294500                                                      115   6e-26

>Os04g0670800 UAS domain containing protein
          Length = 331

 Score =  662 bits (1708), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/331 (96%), Positives = 320/331 (96%)

Query: 1   VRPNSTVAFRNFEEESRQSAVWDSEQNAASSSRDNLAALYRPPFALMFNGPFDKAKLEAS 60
           VRPNSTVAFRNFEEESRQSAVWDSEQNAASSSRDNLAALYRPPFALMFNGPFDKAKLEAS
Sbjct: 1   VRPNSTVAFRNFEEESRQSAVWDSEQNAASSSRDNLAALYRPPFALMFNGPFDKAKLEAS 60

Query: 61  VLDKWLLINLQSTEEFSSHMLNRDTWANEAVAQTIRSNFIFWQVYHDTSEGRKVCTYYNL 120
           VLDKWLLINLQSTEEFSSHMLNRDTWANEAVAQTIRSNFIFWQVYHDTSEGRKVCTYYNL
Sbjct: 61  VLDKWLLINLQSTEEFSSHMLNRDTWANEAVAQTIRSNFIFWQVYHDTSEGRKVCTYYNL 120

Query: 121 VSVPAILLIDPITGQKMRGWNGMIHPDRLLEDLMPYLDKGPKEHHAAQPQKRPRKVDQET 180
           VSVPAILLIDPITGQKMRGWNGMIHPDRLLEDLMPYLDKGPKEHHAAQPQKRPRKVDQET
Sbjct: 121 VSVPAILLIDPITGQKMRGWNGMIHPDRLLEDLMPYLDKGPKEHHAAQPQKRPRKVDQET 180

Query: 181 SIGKQGKTPVPVVATEDEDEELARAVAASLEESKGSDTSXXXXXXXXXXXPSLSAKLNYP 240
           SIGKQGKTPVPVVATEDEDEELARAVAASLEESKGSDTS           PSLSAKLNYP
Sbjct: 181 SIGKQGKTPVPVVATEDEDEELARAVAASLEESKGSDTSEEKIEPEVENEPSLSAKLNYP 240

Query: 241 PLPEEPKGSRELLCRVAIRLPDGRRIQRNFLHTDPIKLLWSFCYPQVEDGDKKAFHFVQP 300
           PLPEEPKGSRELLCRVAIRLPDGRRIQRNFLHTDPIKLLWSFCYPQVEDGDKKAFHFVQP
Sbjct: 241 PLPEEPKGSRELLCRVAIRLPDGRRIQRNFLHTDPIKLLWSFCYPQVEDGDKKAFHFVQP 300

Query: 301 IPRASTNLEYESDKTFKEAGLANSMINLLWD 331
           IPRASTNLEYESDKTFKEAGLANSMINLLWD
Sbjct: 301 IPRASTNLEYESDKTFKEAGLANSMINLLWD 331



>Os02g0640700 UBX domain containing protein
          Length = 522

 Score =  123 bits (309), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 87/317 (27%), Positives = 154/317 (48%), Gaps = 36/317 (11%)

Query: 35  NLAALYRPPFALMFNGPFDKAKLEASVLDKWLLINLQSTEEFSSHMLNRDTWANEAVAQT 94
            LA +YR P  LM +  F   K+ A+  D+WLL+NLQS  EF+S M NRD WA++ +A+ 
Sbjct: 221 TLAEMYRRPRELMHDADFHSTKVHAARQDRWLLLNLQSAGEFASQMHNRDLWADQVIARV 280

Query: 95  IRSNFIFWQVYH----DTSEGRKVCTYYNLV-SVPAILLIDPITGQKMRGWNGMIHPDRL 149
           +R +F+F  + +    D  E  KVC +Y L   +PA+L+IDPITGQ +  W+G+I P+  
Sbjct: 281 VRESFVFSLLENSYGDDDDEASKVCCFYKLHDQLPAVLVIDPITGQMLAKWSGVIQPETF 340

Query: 150 LEDLMPYLDKGPKEHHAAQPQKRPRKVDQETSIGKQGKTPVPV----VATEDEDEELARA 205
           L D+        +E+  ++P  R +    +       + P+PV     A+E   +E A  
Sbjct: 341 LVDI--------EEYSKSKPSMRSKPYIFQ-------RKPMPVRSAPAASEQHHQEPAMV 385

Query: 206 VAAS------LEESKGSDTSXXXXXXXXXXXPSLSAKLNYPPLPEEPKGSR----ELLCR 255
             A+      ++E   +  +           P+ +      P  E+    +    E + R
Sbjct: 386 DTAAPMDIHNVQEPDTAAPAPAPVVEHGVQQPATAGAGAQQPADEQDDDDQPMEGEKMYR 445

Query: 256 VAIRLPDGRRIQRNFLHTDPIKLLWSFCYPQVEDGDKKAFHFVQPIPRASTNLEY-ESDK 314
           + +R PDG  + + F     + +L+++C   + D   +AF   + +       E  + D 
Sbjct: 446 MRVRFPDGSVVTKEFGCKRRVAVLFNYCRSVLHD-KPQAFKIKRLLGVGGAFHELPQGDH 504

Query: 315 TFKEAGLANSMINLLWD 331
           +F++ GL  + ++++ D
Sbjct: 505 SFEDLGLNCATVSVILD 521



>Os07g0294500 
          Length = 317

 Score =  115 bits (287), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 57/131 (43%), Positives = 78/131 (59%), Gaps = 7/131 (5%)

Query: 35  NLAALYRPPFALMFNGPFDKAKLEASVLDKWLLINLQS---TEEFSSHMLNRDTWANEAV 91
            LA LYR P  L + G F  AK+ A+ L +WLL+N+Q+     EF+SH+LNRD WA+E V
Sbjct: 150 TLAELYRAPRELTYRGGFHSAKVHAARLSRWLLVNVQAEYGGREFASHLLNRDVWADETV 209

Query: 92  AQTIRSNFIFWQVYHDTS--EGRKVCTYYNL--VSVPAILLIDPITGQKMRGWNGMIHPD 147
           A  +R NF+FWQ     S  EG KVC +Y L    +PA+L +DP+TGQ M   + +  P 
Sbjct: 210 AMYVRDNFVFWQADEGDSGGEGSKVCCHYKLDRAKLPAVLFVDPVTGQLMEKLHHITDPT 269

Query: 148 RLLEDLMPYLD 158
             L     ++D
Sbjct: 270 DFLMAAEKFID 280



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.132    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,696,661
Number of extensions: 489586
Number of successful extensions: 1268
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1264
Number of HSP's successfully gapped: 3
Length of query: 331
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 230
Effective length of database: 11,762,187
Effective search space: 2705303010
Effective search space used: 2705303010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 156 (64.7 bits)