BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0665700 Os04g0665700|AK121951
         (309 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0665700  Zinc finger, CCCH-type domain containing protein    485   e-137
Os02g0194200  Zinc finger, CCCH-type domain containing protein    326   1e-89
Os06g0618100  Zinc finger, CCCH-type domain containing protein    262   2e-70

>Os04g0665700 Zinc finger, CCCH-type domain containing protein
          Length = 309

 Score =  485 bits (1249), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 258/309 (83%), Positives = 258/309 (83%)

Query: 1   MEGAGAARKRSRPDTANGGAAGGKRSRETESFQTGLSSKLKPCTKFFSTIGCPFGEGCHF 60
           MEGAGAARKRSRPDTANGGAAGGKRSRETESFQTGLSSKLKPCTKFFSTIGCPFGEGCHF
Sbjct: 1   MEGAGAARKRSRPDTANGGAAGGKRSRETESFQTGLSSKLKPCTKFFSTIGCPFGEGCHF 60

Query: 61  SHFVPGGYQAVAKTLNLGNPAVPAPARAPMDHAAGGNSHPASSGKTRMCTKYNTAEGCKF 120
           SHFVPGGYQAVAKTLNLGNPAVPAPARAPMDHAAGGNSHPASSGKTRMCTKYNTAEGCKF
Sbjct: 61  SHFVPGGYQAVAKTLNLGNPAVPAPARAPMDHAAGGNSHPASSGKTRMCTKYNTAEGCKF 120

Query: 121 GDKCHFAHGERELGKPAYMSHESXXXXXXXXXXXXXXXXXXXXXXXXXXXNFGASATAKI 180
           GDKCHFAHGERELGKPAYMSHES                           NFGASATAKI
Sbjct: 121 GDKCHFAHGERELGKPAYMSHESAMAPPMGGRYGGRPEPPPPAAMGPPAGNFGASATAKI 180

Query: 181 SVDASLAGGIIGKGGVNTKQICRVTGVKLSIRDHESDSNLKNIELEGNFDQIKQASNMVG 240
           SVDASLAGGIIGKGGVNTKQICRVTGVKLSIRDHESDSNLKNIELEGNFDQIKQASNMVG
Sbjct: 181 SVDASLAGGIIGKGGVNTKQICRVTGVKLSIRDHESDSNLKNIELEGNFDQIKQASNMVG 240

Query: 241 ELIATISPSTXXXXXXXXXXXXXXXXXXXXXXXXNYKTKLCENFVKGTCTFGDRCHFAHG 300
           ELIATISPST                        NYKTKLCENFVKGTCTFGDRCHFAHG
Sbjct: 241 ELIATISPSTPAKKPAGSAAGAAPAGRGGPGGRSNYKTKLCENFVKGTCTFGDRCHFAHG 300

Query: 301 ENEQRKGAA 309
           ENEQRKGAA
Sbjct: 301 ENEQRKGAA 309



>Os02g0194200 Zinc finger, CCCH-type domain containing protein
          Length = 281

 Score =  326 bits (836), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 175/283 (61%), Positives = 190/283 (67%), Gaps = 8/283 (2%)

Query: 28  ETESFQTGLSSKLKPCTKFFSTIGCPFGEGCHFSHFVPGGYQAVAKTLNLGNPAV-PAPA 86
           E+ESFQTG+ SK KPCTKFFST GCPFGEGCHF H  PGGYQAVAK  NLG PA+ P P 
Sbjct: 5   ESESFQTGVGSKSKPCTKFFSTSGCPFGEGCHFLHHFPGGYQAVAKMTNLGGPAIAPPPG 64

Query: 87  RAPMDHAAGGNSHPASSGKTRMCTKYNTAEGCKFGDKCHFAHGERELGKPAYMSHESXXX 146
           R PM +A   +  P  + KTR+C KYNTAEGCK+GDKCHFAHGERELGKP  M   S   
Sbjct: 65  RMPMGNAVP-DGPPTPTVKTRLCNKYNTAEGCKWGDKCHFAHGERELGKPMLMD-SSMPP 122

Query: 147 XXXXXXXXXXXXXXXXXXXXXXXXNFGASATAKISVDASLAGGIIGKGGVNTKQICRVTG 206
                                   +FGASATAKISVDASLAGGIIG+GGVNTKQI RVTG
Sbjct: 123 PMGPRPTGHFAPPPMPSPAMSTPASFGASATAKISVDASLAGGIIGRGGVNTKQISRVTG 182

Query: 207 VKLSIRDHESDSNLKNIELEGNFDQIKQASNMVGELIATISPSTXXXXXXXXXXXXXXXX 266
            KL+IRDHESD+NLKNIELEG FDQIK AS MV ELI +I                    
Sbjct: 183 AKLAIRDHESDTNLKNIELEGTFDQIKNASAMVRELIVSIG-----GGAPPQGKKPVGGS 237

Query: 267 XXXXXXXXNYKTKLCENFVKGTCTFGDRCHFAHGENEQRKGAA 309
                   N+KTKLCENF KG+CTFGDRCHFAHGENE RK AA
Sbjct: 238 HRGGGPGSNFKTKLCENFTKGSCTFGDRCHFAHGENELRKSAA 280



>Os06g0618100 Zinc finger, CCCH-type domain containing protein
          Length = 259

 Score =  262 bits (669), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 149/263 (56%), Positives = 161/263 (61%), Gaps = 13/263 (4%)

Query: 48  STIGCPFGEGCHFSHFVPGGYQAVAKTLNLGNPAVPAPA-RAPMDHAAGGNSHPASSGKT 106
           ST GCPFG  CHF H  PGGYQA AK  + G  AV AP  R P+   A  N  P SS KT
Sbjct: 7   STSGCPFGSSCHFLHNFPGGYQAAAKMTSHGGTAVAAPPGRMPLGPGAP-NGPPTSSVKT 65

Query: 107 RMCTKYNTAEGCKFGDKCHFAHGERELGKPAYMSHESXXXXXXXXXXXXXXXXXXXXXXX 166
           RMC KYNTAEGCK+G KCHFAHGERELGKP  + +                         
Sbjct: 66  RMCNKYNTAEGCKWGSKCHFAHGERELGKPMLLDNS----MPHPMGSMPFEAPPMPGPDI 121

Query: 167 XXXXNFGASATAKISVDASLAGGIIGKGGVNTKQICRVTGVKLSIRDHESDSNLKNIELE 226
                FGASATAKISVDASLAGGIIGKGG NTK I R+TG KL+IRD+ES+ NLKNIELE
Sbjct: 122 VPPSTFGASATAKISVDASLAGGIIGKGGTNTKHISRMTGAKLAIRDNESNPNLKNIELE 181

Query: 227 GNFDQIKQASNMVGELIATISPSTXXXXXXXXXXXXXXXXXXXXXXXXNYKTKLCENFVK 286
           G FDQIK AS MV ELI  IS                           N+KTKLCENF K
Sbjct: 182 GTFDQIKHASAMVTELIVRIS-------GNAPPAKNPGRGSHAGGPGSNFKTKLCENFNK 234

Query: 287 GTCTFGDRCHFAHGENEQRKGAA 309
           G+CTFGDRCHFAHGE+E RK  A
Sbjct: 235 GSCTFGDRCHFAHGESELRKPPA 257



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.131    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,951,903
Number of extensions: 408832
Number of successful extensions: 2026
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 2009
Number of HSP's successfully gapped: 4
Length of query: 309
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 208
Effective length of database: 11,762,187
Effective search space: 2446534896
Effective search space used: 2446534896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 156 (64.7 bits)