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Os02g0194200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, CCCH-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.6 (0.012) R2 : 0.5
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.58 (0.0293) R2dC : 0.433 R2C : 0.41
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.202 (0.0253) R2dN8 : 0.0907 R2N8 : 0.0674
σ : 0.227
deviance : 23.46
__
_____
C
peak time of C : 21.9
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
15.96 0.188 13.6 0.513 0.588 -0.409 0.177 0.429 0.269 21.9 1014 1314 -- --
16.05 0.187 13.6 0.514 0.581 -0.497 0.138 -- 0.271 21.8 1015 1329 -- --
16.08 0.187 13.6 0.508 0.587 -0.41 -- 0.469 0.268 21.9 1014 1314 -- --
16.09 0.187 13.6 0.504 0.587 -0.615 -- -- 0.27 21.9 1015 1321 -- --
36.63 0.282 13.6 0.51 -- -0.299 -- 0.444 0.267 -- 1014 1267 -- --
17.22 0.195 13.6 0.487 0.58 -- 0.234 -- 0.256 21.8 -- -- -- --
17.43 0.196 13.6 0.478 0.579 -- -- -- 0.256 21.9 -- -- -- --
36.34 0.281 13.6 0.485 -- -0.488 -- -- 0.28 -- 1015 694 -- --
22.59 0.221 13.6 -- 0.591 -0.417 -- -- 0.217 22 1014 1271 -- --
37.49 0.286 13.6 0.485 -- -- -- -- 0.256 -- -- -- -- --
23.46 0.227 13.6 -- 0.58 -- -- -- 0.202 21.9 -- -- -- --
42.91 0.305 13.6 -- -- -0.429 -- -- 0.208 -- 1015 568 -- --
43.68 0.308 13.6 -- -- -- -- -- 0.202 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 14.89 temperature 15.0 720 > th dose independent rect. 22 15
2 14.92 temperature 15.0 720 > th dose independent rect. 21 10
3 15.02 humidity 90.0 30 < th dose independent rect. 1 17
4 15.03 temperature 15.0 720 > th dose independent rect. 19 14
5 15.05 temperature 15.0 720 > th dose independent rect. 23 8
6 15.05 temperature 15.0 720 > th dose independent rect. 19 12
7 15.06 temperature 15.0 720 > th dose independent rect. 1 9
8 15.07 temperature 20.0 270 > th dose independent rect. 3 14
14 15.11 atmosphere 1015.0 720 < th dose independent rect. 23 8
17 15.12 temperature 15.0 720 > th dose independent rect. 19 16
20 15.14 temperature 25.0 30 < th dose dependent rect. 5 7
21 15.15 temperature 15.0 720 > th dose independent rect. 21 18
24 15.16 humidity 90.0 30 < th dose independent rect. 6 12
38 15.20 atmosphere 1015.0 720 < th dose independent rect. 21 10
39 15.20 temperature 15.0 720 > th dose independent rect. 23 17
42 15.21 temperature 15.0 720 > th dose independent rect. 22 23
44 15.22 temperature 20.0 30 > th dose independent rect. 6 12
45 15.23 temperature 15.0 720 > th dose independent rect. 3 4
58 15.27 temperature 15.0 1440 > th dose independent rect. 10 5
66 15.28 temperature 10.0 90 > th dose dependent rect. 3 14
71 15.30 atmosphere 1015.0 720 < th dose independent rect. 19 21
82 15.33 temperature 15.0 720 > th dose independent sin 7 NA
89 15.34 temperature 15.0 720 > th dose independent sin 5 NA
93 15.34 temperature 15.0 720 > th dose independent rect. 23 12
96 15.34 temperature 15.0 720 > th dose independent rect. 10 23
97 15.35 temperature 15.0 720 > th dose independent rect. 3 8
99 15.35 atmosphere 1015.0 720 < th dose independent rect. 19 14
121 15.37 temperature 15.0 720 > th dose independent rect. 13 18
141 15.39 temperature 15.0 30 > th dose dependent rect. 6 12
158 15.41 temperature 15.0 1440 > th dose independent rect. 10 12
169 15.42 temperature 15.0 10 > th dose dependent rect. 4 14
178 15.43 atmosphere 1015.0 720 < th dose independent rect. 19 16
181 15.43 humidity 50.0 90 > th dose dependent rect. 17 20
189 15.45 humidity 50.0 43200 > th dose independent sin 12 NA
191 15.45 humidity 90.0 270 < th dose independent rect. 10 7
193 15.45 temperature 20.0 4320 < th dose dependent rect. 15 4
209 15.47 radiation 10.0 30 > th dose independent rect. 13 20
212 15.48 humidity 50.0 43200 < th dose independent sin 12 NA
214 15.48 wind 5.0 90 > th dose independent rect. 13 12
219 15.49 temperature 15.0 1440 > th dose independent rect. 8 8
242 15.50 radiation 20.0 30 < th dose dependent sin 13 NA
248 15.50 humidity 60.0 30 > th dose dependent rect. 9 21
257 15.51 atmosphere 1015.0 720 < th dose independent rect. 23 16
275 15.53 wind 5.0 90 < th dose independent rect. 17 10
277 15.53 atmosphere 1015.0 720 < th dose independent rect. 19 12
298 15.55 humidity 70.0 30 > th dose independent rect. 9 21
304 15.56 humidity 90.0 90 < th dose independent rect. 13 4
305 15.56 temperature 20.0 270 > th dose independent rect. 10 7
317 15.56 temperature 15.0 720 > th dose independent rect. 10 21
324 15.57 atmosphere 1015.0 720 < th dose independent sin 1 NA
329 15.57 humidity 50.0 43200 > th dose independent rect. 15 20
332 15.57 humidity 60.0 43200 < th dose dependent rect. 4 4
334 15.57 wind 3.0 30 > th dose dependent rect. 13 13
340 15.58 precipitation 0.1 720 < th dose independent rect. 19 16
345 15.58 humidity 50.0 43200 < th dose dependent rect. 17 16
346 15.58 precipitation 0.1 720 < th dose dependent rect. 19 16
348 15.59 atmosphere 1015.0 720 < th dose independent sin 3 NA
350 15.59 radiation 10.0 30 > th dose independent sin 13 NA
355 15.59 temperature 10.0 43200 > th dose independent rect. 10 10
371 15.60 atmosphere 1015.0 720 < th dose independent sin 8 NA
372 15.60 humidity 90.0 270 < th dose independent rect. 13 1
380 15.60 radiation 10.0 30 > th dose independent rect. 15 18
383 15.60 temperature 25.0 90 < th dose dependent sin 3 NA
393 15.61 temperature 15.0 90 > th dose independent sin 22 NA
395 15.61 temperature 15.0 90 > th dose independent sin 4 NA
406 15.61 wind 3.0 30 > th dose dependent rect. 13 11
409 15.61 humidity 70.0 90 > th dose dependent rect. 9 18
415 15.62 radiation 10.0 30 < th dose independent sin 13 NA
416 15.62 humidity 90.0 10 < th dose independent rect. 13 5
419 15.62 atmosphere 1015.0 1440 < th dose independent rect. 3 7
420 15.62 atmosphere 1015.0 720 < th dose independent rect. 1 9
439 15.62 temperature 20.0 270 < th dose dependent rect. 4 17
440 15.62 humidity 60.0 90 > th dose dependent rect. 7 23
442 15.63 atmosphere 1010.0 270 < th dose independent rect. 11 6
456 15.63 radiation 40.0 270 < th dose independent rect. 17 19
462 15.63 wind 1.0 30 > th dose dependent rect. 13 9
480 15.64 wind 1.0 270 > th dose independent rect. 1 15
485 15.64 humidity 60.0 43200 < th dose dependent rect. 13 1
490 15.64 humidity 50.0 43200 < th dose dependent rect. 16 18
492 15.64 humidity 90.0 30 < th dose dependent rect. 13 20
501 15.65 humidity 50.0 43200 > th dose independent rect. 14 8
512 15.65 humidity 50.0 43200 < th dose independent rect. 15 18
513 15.65 temperature 15.0 720 > th dose independent rect. 3 19
517 15.65 humidity 90.0 270 < th dose dependent rect. 11 5
532 15.66 wind 5.0 30 > th dose independent rect. 15 9
545 15.66 atmosphere 995.0 90 > th dose dependent rect. 17 10
552 15.67 temperature 15.0 1440 > th dose independent sin 22 NA
567 15.67 wind 1.0 270 > th dose dependent rect. 12 4
611 15.68 humidity 50.0 43200 < th dose dependent sin 11 NA
630 15.69 temperature 10.0 43200 > th dose independent rect. 8 7
645 15.69 humidity 90.0 90 < th dose dependent rect. 13 4
662 15.70 humidity 50.0 43200 > th dose independent rect. 14 4
684 15.70 humidity 90.0 270 < th dose dependent rect. 13 1
699 15.70 humidity 60.0 43200 < th dose dependent rect. 12 21
703 15.71 humidity 50.0 43200 > th dose independent rect. 15 1
723 15.71 wind 1.0 270 > th dose dependent rect. 13 1
736 15.71 humidity 90.0 30 < th dose dependent rect. 13 18
747 15.72 temperature 20.0 90 < th dose independent rect. 5 7
757 15.72 wind 9.0 90 < th dose independent rect. 3 14
775 15.72 humidity 50.0 43200 < th dose dependent rect. 20 14
779 15.72 wind 1.0 30 > th dose dependent rect. 13 20
781 15.72 radiation 20.0 270 < th dose dependent rect. 7 20
785 15.73 temperature 15.0 4320 > th dose independent rect. 12 3
810 15.73 humidity 50.0 90 > th dose independent rect. 17 20
814 15.73 humidity 90.0 90 < th dose dependent sin 18 NA
829 15.73 humidity 60.0 43200 < th dose dependent rect. 12 18
836 15.74 precipitation 0.1 90 < th dose independent rect. 13 4
838 15.74 wind 5.0 30 > th dose independent rect. 15 7
860 15.74 atmosphere 1015.0 720 < th dose independent rect. 23 23
861 15.74 precipitation 0.1 90 < th dose dependent rect. 13 4
874 15.74 humidity 60.0 43200 < th dose dependent rect. 12 16
882 15.75 humidity 90.0 30 < th dose independent sin 23 NA
887 15.75 temperature 10.0 90 > th dose independent rect. 13 4
889 15.75 atmosphere 1010.0 90 < th dose independent rect. 13 4
905 15.75 temperature 15.0 1440 > th dose independent rect. 10 14
911 15.75 temperature 10.0 90 > th dose independent rect. 17 20
912 15.75 atmosphere 995.0 90 > th dose independent rect. 17 20
914 15.75 precipitation 0.1 720 < th dose independent rect. 19 23
923 15.75 humidity 60.0 43200 < th dose dependent rect. 12 9
934 15.75 humidity 90.0 30 < th dose dependent rect. 13 15
945 15.75 precipitation 0.1 720 < th dose dependent rect. 19 23
948 15.76 humidity 50.0 43200 < th dose independent rect. 15 2
949 15.76 wind 3.0 270 > th dose independent rect. 12 4
966 15.76 humidity 50.0 10 > th dose independent rect. 18 19
969 15.76 wind 1.0 10 > th dose dependent rect. 13 5