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Os04g0665700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, CCCH-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.3 (0.0137) R2 : 0.531
β1 : 0.994 (0.05) R2dD : 0.421 R2D : 0.237
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.426 (0.0292) R2dN8 : 0.294 R2N8 : 0.11
σ : 0.256
deviance : 30.08
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
21.3 0.217 10.3 1.01 0.144 0.282 0.348 -1.01 0.458 0.96 81 254 -- --
23.85 0.227 10.3 0.941 0.13 0.276 0.0309 -- 0.454 0.856 81.56 243 -- --
21.68 0.217 10.3 0.977 0.152 0.289 -- -0.888 0.454 0.644 81.93 271 -- --
23.84 0.227 10.3 0.948 0.126 0.273 -- -- 0.453 0.87 81.35 239 -- --
22.6 0.221 10.3 0.981 -- 0.357 -- -0.779 0.471 -- 79.77 210 -- --
25.65 0.237 10.3 0.98 0.279 -- -0.0983 -- 0.418 3.18 -- -- -- --
25.68 0.237 10.3 0.982 0.278 -- -- -- 0.419 3.08 -- -- -- --
23.78 0.227 10.3 0.993 -- 0.317 -- -- 0.447 -- 69.21 68 -- --
46.99 0.319 10.3 -- 0.132 0.403 -- -- 0.375 23.4 84 268 -- --
30.08 0.256 10.3 0.994 -- -- -- -- 0.426 -- -- -- -- --
51.09 0.334 10.3 -- 0.297 -- -- -- 0.309 3.09 -- -- -- --
47.95 0.323 10.3 -- -- 0.408 -- -- 0.365 -- 82 244 -- --
56.13 0.35 10.3 -- -- -- -- -- 0.316 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 19.93 humidity 70 43200 < th dose dependent rect. 22 10
4 20.14 humidity 60 43200 < th dose independent rect. 21 12
6 20.18 radiation 40 43200 > th dose independent rect. 7 1
22 20.18 radiation 40 43200 > th dose dependent rect. 7 1
41 20.28 humidity 60 43200 > th dose independent rect. 21 12
43 20.30 humidity 70 43200 > th dose independent rect. 22 10
63 20.51 wind 1 14400 < th dose dependent rect. 5 1
68 20.56 humidity 70 30 > th dose dependent sin 2 NA
112 20.83 humidity 80 43200 < th dose independent rect. 24 19
114 20.86 humidity 90 14400 < th dose independent rect. 5 1
120 20.86 radiation 10 4320 < th dose dependent rect. 15 3
125 20.86 humidity 70 43200 > th dose dependent rect. 22 20
134 20.88 humidity 70 43200 > th dose dependent rect. 11 19
150 20.90 humidity 90 10 < th dose dependent rect. 21 19
161 20.92 humidity 90 270 < th dose independent rect. 6 8
172 20.94 humidity 80 43200 > th dose independent rect. 23 20
179 20.95 humidity 80 43200 > th dose independent rect. 11 15
213 20.99 humidity 90 43200 < th dose independent rect. 14 1
216 20.99 radiation 1 14400 < th dose independent rect. 6 11
218 20.99 humidity 80 43200 > th dose independent rect. 10 18
223 21.00 radiation 1 14400 > th dose independent rect. 6 11
224 21.00 humidity 80 43200 > th dose independent rect. 1 17
228 21.00 humidity 70 43200 > th dose dependent no NA NA
235 21.01 humidity 90 14400 > th dose independent rect. 5 1
236 21.01 humidity 80 43200 < th dose independent rect. 11 15
249 21.02 humidity 90 270 < th dose independent rect. 6 19
251 21.02 humidity 90 43200 > th dose dependent rect. 14 1
255 21.02 humidity 90 10 < th dose dependent rect. 23 17
259 21.02 humidity 70 43200 > th dose dependent rect. 2 23
263 21.03 humidity 70 43200 > th dose dependent sin 16 NA
281 21.04 humidity 80 43200 < th dose independent rect. 10 18
298 21.05 humidity 50 14400 < th dose independent rect. 12 1
309 21.06 radiation 1 4320 > th dose independent rect. 15 4
331 21.07 temperature 20 43200 < th dose dependent rect. 4 15
346 21.08 temperature 20 43200 < th dose dependent rect. 6 2
368 21.09 humidity 80 43200 > th dose independent rect. 2 15
380 21.09 temperature 20 43200 < th dose dependent rect. 5 12
385 21.09 humidity 80 270 > th dose dependent rect. 23 15
396 21.10 humidity 70 43200 > th dose dependent sin 4 NA
422 21.11 temperature 20 43200 < th dose dependent sin 1 NA
479 21.13 wind 1 14400 > th dose independent rect. 5 1
483 21.13 humidity 80 43200 > th dose independent rect. 3 21
489 21.13 temperature 20 43200 < th dose dependent rect. 5 7
518 21.14 temperature 20 43200 < th dose dependent no NA NA
528 21.14 temperature 20 43200 < th dose dependent rect. 12 19
560 21.15 humidity 80 43200 > th dose independent rect. 3 13
568 21.15 radiation 30 43200 > th dose dependent rect. 16 1
588 21.15 temperature 20 43200 < th dose dependent rect. 13 17
626 21.16 temperature 20 43200 < th dose dependent sin 16 NA
640 21.16 temperature 20 43200 < th dose dependent rect. 14 13
692 21.17 temperature 20 43200 < th dose dependent sin 14 NA
704 21.17 temperature 20 43200 < th dose dependent rect. 15 11
779 21.18 humidity 80 270 > th dose dependent rect. 19 22
819 21.20 wind 1 14400 < th dose independent rect. 5 2
821 21.20 radiation 1 4320 < th dose independent rect. 15 4
832 21.20 radiation 1 4320 < th dose independent rect. 15 12
852 21.20 humidity 80 43200 > th dose dependent rect. 21 4
897 21.20 humidity 80 270 > th dose dependent rect. 22 23
898 21.21 humidity 80 43200 > th dose independent sin 17 NA
913 21.21 radiation 1 4320 < th dose dependent sin 17 NA
924 21.21 radiation 1 4320 < th dose dependent rect. 9 10
971 21.22 temperature 20 43200 < th dose dependent rect. 24 1
972 21.22 humidity 80 14400 > th dose dependent rect. 5 1
992 21.22 radiation 1 14400 < th dose dependent rect. 5 12