BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0661300 Os04g0661300|AK070723
(346 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0661300 Conserved hypothetical protein 566 e-162
Os02g0519300 Conserved hypothetical protein 138 8e-33
>Os04g0661300 Conserved hypothetical protein
Length = 346
Score = 566 bits (1460), Expect = e-162, Method: Compositional matrix adjust.
Identities = 279/300 (93%), Positives = 279/300 (93%)
Query: 47 PKPETEYFPEKRNLEDLWLSAFPVGTEWENIDKIKEFNWNFENLEKALEEGGELYGKTVY 106
PKPETEYFPEKRNLEDLWLSAFPVGTEWENIDKIKEFNWNFENLEKALEEGGELYGKTVY
Sbjct: 47 PKPETEYFPEKRNLEDLWLSAFPVGTEWENIDKIKEFNWNFENLEKALEEGGELYGKTVY 106
Query: 107 LFGSTEPQLLEVNGESKIVLIPIVVAVDCPFPPSDKIGINSVQRENEEIVPMKAMKMAWV 166
LFGSTEPQLLEVNGESKIVLIPIVVAVDCPFPPSDKIGINSVQRENEEIVPMKAMKMAWV
Sbjct: 107 LFGSTEPQLLEVNGESKIVLIPIVVAVDCPFPPSDKIGINSVQRENEEIVPMKAMKMAWV 166
Query: 167 PYVPLEDRLSRIDSLKTKIFTLGCTQRRSALRHLKTERVKLFDYCMPYYMPLNPPEDEDD 226
PYVPLEDRLSRIDSLKTKIFTLGCTQRRSALRHLKTERVKLFDYCMPYYMPLNPPEDEDD
Sbjct: 167 PYVPLEDRLSRIDSLKTKIFTLGCTQRRSALRHLKTERVKLFDYCMPYYMPLNPPEDEDD 226
Query: 227 TVVNIIYPLEPPIVCDFDWEMDDYEDFADEKVKDEVLPEDXXXXXXXXXXXXXXXXXXXX 286
TVVNIIYPLEPPIVCDFDWEMDDYEDFADEKVKDEVLPED
Sbjct: 227 TVVNIIYPLEPPIVCDFDWEMDDYEDFADEKVKDEVLPEDEKEKFKEFIKERVRERKREL 286
Query: 287 XQAKEARKKAIDDMDPKVKEAFENIKFYKFYPVKTPDTPDVSNVKAKYINRYYRHAHHLM 346
QAKEARKKAIDDMDPKVKEAFENIKFYKFYPVKTPDTPDVSNVKAKYINRYYRHAHHLM
Sbjct: 287 KQAKEARKKAIDDMDPKVKEAFENIKFYKFYPVKTPDTPDVSNVKAKYINRYYRHAHHLM 346
>Os02g0519300 Conserved hypothetical protein
Length = 118
Score = 138 bits (347), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 73/116 (62%), Positives = 81/116 (69%), Gaps = 3/116 (2%)
Query: 231 IIYPLEPPIVCDFDWEMDDYEDFADEKVKDEVLPEDXXXXXXXXXXXXXXXXXXXXXQAK 290
++ PLE V EM +DFADEKVK+E LPED QAK
Sbjct: 6 LVLPLEVTCVWSHSVEM---QDFADEKVKEEGLPEDEREKMKEFLKEKVRERKRELKQAK 62
Query: 291 EARKKAIDDMDPKVKEAFENIKFYKFYPVKTPDTPDVSNVKAKYINRYYRHAHHLM 346
EARKKAIDDMDPK+KEAFENI+FYKFYPVKT DTPDVSNVKA+YINRYYR+AHHLM
Sbjct: 63 EARKKAIDDMDPKIKEAFENIQFYKFYPVKTLDTPDVSNVKARYINRYYRNAHHLM 118
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.138 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,701,652
Number of extensions: 420511
Number of successful extensions: 969
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 967
Number of HSP's successfully gapped: 2
Length of query: 346
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 244
Effective length of database: 11,709,973
Effective search space: 2857233412
Effective search space used: 2857233412
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 156 (64.7 bits)