Os04g0661300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0661300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 17.22 | 0.195 | 9.99 | -0.953 | 0.265 | 0.988 | -0.0194 | 0.583 | -0.338 | 10 | 31.22 | 510 | -- | -- |
| 17.49 | 0.195 | 9.98 | -0.864 | 0.28 | 1.01 | 0.0601 | -- | -0.331 | 10.1 | 32.25 | 482 | -- | -- |
| 17.22 | 0.193 | 9.99 | -0.954 | 0.266 | 0.984 | -- | 0.581 | -0.337 | 10 | 31.03 | 508 | -- | -- |
| 17.49 | 0.195 | 9.98 | -0.861 | 0.279 | 1.01 | -- | -- | -0.325 | 10.1 | 32.15 | 493 | -- | -- |
| 20.26 | 0.21 | 9.99 | -0.903 | -- | 1.18 | -- | 0.484 | -0.318 | -- | 31.85 | 606 | -- | -- |
| 29.58 | 0.255 | 10 | -1.1 | 0.487 | -- | 0.18 | -- | -0.488 | 8.36 | -- | -- | -- | -- |
| 29.68 | 0.255 | 10 | -1.09 | 0.487 | -- | -- | -- | -0.488 | 8.37 | -- | -- | -- | -- |
| 20.55 | 0.211 | 9.98 | -0.805 | -- | 1.2 | -- | -- | -0.305 | -- | 37.07 | 618 | -- | -- |
| 30.46 | 0.257 | 9.93 | -- | 0.456 | 1.16 | -- | -- | -0.143 | 7.83 | 126.2 | 6779 | -- | -- |
| 42.87 | 0.306 | 10 | -1.09 | -- | -- | -- | -- | -0.483 | -- | -- | -- | -- | -- |
| 61.15 | 0.366 | 9.98 | -- | 0.482 | -- | -- | -- | -0.366 | 8.54 | -- | -- | -- | -- |
| 33.14 | 0.268 | 9.93 | -- | -- | 1.03 | -- | -- | -0.05 | -- | 129.7 | 46829 | -- | -- |
| 74.2 | 0.402 | 10 | -- | -- | -- | -- | -- | -0.362 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 17.24 | temperature | 15 | 720 | > th | dose dependent | rect. | 20 | 21 |
| 2 | 17.25 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 20 |
| 21 | 17.41 | temperature | 10 | 1440 | > th | dose dependent | rect. | 22 | 11 |
| 23 | 17.41 | temperature | 30 | 1440 | < th | dose dependent | rect. | 22 | 11 |
| 30 | 17.42 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 8 |
| 41 | 17.44 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 6 |
| 55 | 17.46 | temperature | 10 | 720 | > th | dose dependent | rect. | 14 | 19 |
| 84 | 17.50 | temperature | 10 | 1440 | > th | dose dependent | rect. | 2 | 7 |
| 100 | 17.52 | temperature | 30 | 1440 | < th | dose dependent | sin | 9 | NA |
| 101 | 17.52 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 5 |
| 124 | 17.54 | temperature | 10 | 1440 | > th | dose dependent | sin | 9 | NA |
| 149 | 17.55 | temperature | 10 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 280 | 17.67 | temperature | 30 | 1440 | < th | dose dependent | rect. | 22 | 2 |
| 300 | 17.68 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 23 |
| 314 | 17.70 | temperature | 15 | 1440 | > th | dose dependent | rect. | 22 | 2 |
| 404 | 17.75 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 23 |
| 422 | 17.77 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 591 | 17.89 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 715 | 17.95 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 23 |