Os02g0519300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0519300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 53.77 | 0.345 | 9.25 | -1.55 | 0.0706 | -0.477 | -0.881 | 0.297 | -0.0739 | 16.5 | 1014 | 6427 | -- | -- |
| 54.11 | 0.343 | 9.25 | -1.49 | 0.0585 | -0.49 | -0.892 | -- | -0.0633 | 16.5 | 1014 | 6520 | -- | -- |
| 55.33 | 0.346 | 9.25 | -1.53 | 0.109 | -0.507 | -- | 0.226 | -0.0605 | 12.8 | 1014 | 6338 | -- | -- |
| 55.55 | 0.347 | 9.24 | -1.5 | 0.113 | -0.497 | -- | -- | -0.0622 | 12.5 | 1014 | 6529 | -- | -- |
| 56.09 | 0.349 | 9.25 | -1.54 | -- | -0.485 | -- | 0.219 | -0.0695 | -- | 1014 | 6450 | -- | -- |
| 62.8 | 0.372 | 9.22 | -1.31 | 0.0678 | -- | -0.814 | -- | 0.0467 | 16.3 | -- | -- | -- | -- |
| 64.04 | 0.375 | 9.22 | -1.32 | 0.113 | -- | -- | -- | 0.0423 | 12.2 | -- | -- | -- | -- |
| 56.26 | 0.349 | 9.25 | -1.52 | -- | -0.472 | -- | -- | -0.0695 | -- | 1014 | 8548 | -- | -- |
| 103.22 | 0.473 | 9.2 | -- | 0.133 | -0.526 | -- | -- | 0.131 | 12.9 | 1014 | 3671 | -- | -- |
| 64.85 | 0.376 | 9.22 | -1.32 | -- | -- | -- | -- | 0.0406 | -- | -- | -- | -- | -- |
| 110 | 0.491 | 9.19 | -- | 0.132 | -- | -- | -- | 0.189 | 12.7 | -- | -- | -- | -- |
| 104.48 | 0.476 | 9.2 | -- | -- | -0.531 | -- | -- | 0.135 | -- | 1014 | 3640 | -- | -- |
| 111.1 | 0.492 | 9.19 | -- | -- | -- | -- | -- | 0.188 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 51.82 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 3 |
| 2 | 51.82 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 3 |
| 3 | 51.87 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 3 |
| 4 | 51.94 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 3 |
| 12 | 52.33 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 7 |
| 23 | 52.46 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 9 |
| 29 | 52.58 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 9 |
| 30 | 52.58 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 9 |
| 31 | 52.59 | radiation | 20.0 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 36 | 52.70 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 9 |
| 43 | 52.85 | radiation | 30.0 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 59 | 53.07 | radiation | 20.0 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 61 | 53.13 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 67 | 53.25 | humidity | 90.0 | 43200 | < th | dose dependent | rect. | 8 | 2 |
| 74 | 53.30 | humidity | 50.0 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 75 | 53.33 | humidity | 90.0 | 43200 | < th | dose dependent | rect. | 8 | 4 |
| 80 | 53.38 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 6 | 9 |
| 83 | 53.39 | radiation | 10.0 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 97 | 53.41 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 6 | 9 |
| 99 | 53.42 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 6 | 11 |
| 106 | 53.46 | humidity | 90.0 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 118 | 53.54 | humidity | 50.0 | 43200 | > th | dose dependent | rect. | 4 | 8 |
| 119 | 53.54 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 6 | 9 |
| 130 | 53.60 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 134 | 53.60 | humidity | 50.0 | 43200 | > th | dose dependent | rect. | 3 | 11 |
| 151 | 53.68 | radiation | 20.0 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 155 | 53.69 | humidity | 50.0 | 43200 | > th | dose dependent | sin | 3 | NA |
| 177 | 53.74 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 178 | 53.74 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 1 | 15 |
| 196 | 53.77 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 1 | 18 |
| 210 | 53.78 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 2 | 14 |
| 228 | 53.79 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 6 | 2 |
| 233 | 53.79 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 8 | 1 |
| 252 | 53.81 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 18 | 15 |
| 260 | 53.82 | humidity | 70.0 | 43200 | > th | dose independent | sin | 3 | NA |
| 264 | 53.82 | humidity | 90.0 | 43200 | < th | dose dependent | sin | 1 | NA |
| 270 | 53.83 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 1 | 9 |
| 271 | 53.83 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 4 | 10 |
| 279 | 53.84 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 299 | 53.84 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 2 | 11 |
| 303 | 53.85 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 10 | 2 |
| 327 | 53.86 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 5 | 3 |
| 329 | 53.86 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 4 | 5 |
| 330 | 53.86 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 3 | 7 |
| 342 | 53.87 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 5 | 5 |
| 360 | 53.88 | humidity | 70.0 | 43200 | < th | dose independent | sin | 3 | NA |
| 387 | 53.89 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 388 | 53.89 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 393 | 53.89 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 9 | 2 |
| 413 | 53.90 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 6 | 4 |
| 421 | 53.90 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 23 | 15 |
| 428 | 53.91 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 5 | 7 |
| 445 | 53.92 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 450 | 53.92 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 9 | 15 |
| 454 | 53.92 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 9 | 20 |
| 459 | 53.92 | radiation | 1.0 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 475 | 53.93 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 9 | 18 |
| 511 | 53.94 | atmosphere | 995.0 | 43200 | < th | dose dependent | sin | 5 | NA |
| 528 | 53.95 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 10 | 15 |
| 552 | 53.96 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 607 | 53.97 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 11 | 3 |
| 710 | 54.00 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 17 | 23 |
| 727 | 54.00 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 12 | 21 |
| 729 | 54.01 | humidity | 70.0 | 43200 | < th | dose independent | no | NA | NA |
| 739 | 54.01 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 18 | 15 |
| 770 | 54.02 | humidity | 70.0 | 43200 | > th | dose independent | sin | 19 | NA |
| 851 | 54.03 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 13 | 23 |
| 866 | 54.04 | humidity | 70.0 | 43200 | > th | dose independent | no | NA | NA |
| 868 | 54.04 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 9 | 2 |
| 871 | 54.04 | radiation | 30.0 | 43200 | < th | dose independent | rect. | 17 | 14 |
| 880 | 54.04 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 9 | 2 |
| 892 | 54.05 | humidity | 70.0 | 43200 | < th | dose independent | sin | 18 | NA |
| 907 | 54.05 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 17 | 23 |
| 934 | 54.06 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 947 | 54.06 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 13 | 23 |
| 972 | 54.07 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 14 | 1 |