BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0519300 Os02g0519300|AK072024
         (118 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0519300  Conserved hypothetical protein                      209   4e-55
Os04g0661300  Conserved hypothetical protein                      144   2e-35

>Os02g0519300 Conserved hypothetical protein
          Length = 118

 Score =  209 bits (532), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 102/118 (86%), Positives = 102/118 (86%)

Query: 1   FGSFALVLPLEVTCVWSHSVEMQDFADEKVKEEGLPEDEREKMXXXXXXXXXXXXXXXXQ 60
           FGSFALVLPLEVTCVWSHSVEMQDFADEKVKEEGLPEDEREKM                Q
Sbjct: 1   FGSFALVLPLEVTCVWSHSVEMQDFADEKVKEEGLPEDEREKMKEFLKEKVRERKRELKQ 60

Query: 61  AKEARKKAIDDMDPKIKEAFENIQFYKFYPVKTLDTPDVSNVKARYINRYYRNAHHLM 118
           AKEARKKAIDDMDPKIKEAFENIQFYKFYPVKTLDTPDVSNVKARYINRYYRNAHHLM
Sbjct: 61  AKEARKKAIDDMDPKIKEAFENIQFYKFYPVKTLDTPDVSNVKARYINRYYRNAHHLM 118



>Os04g0661300 Conserved hypothetical protein
          Length = 346

 Score =  144 bits (362), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 76/116 (65%), Positives = 85/116 (73%), Gaps = 3/116 (2%)

Query: 6   LVLPLEVTCVWSHSVEM---QDFADEKVKEEGLPEDEREKMXXXXXXXXXXXXXXXXQAK 62
           ++ PLE   V     EM   +DFADEKVK+E LPEDE+EK                 QAK
Sbjct: 231 IIYPLEPPIVCDFDWEMDDYEDFADEKVKDEVLPEDEKEKFKEFIKERVRERKRELKQAK 290

Query: 63  EARKKAIDDMDPKIKEAFENIQFYKFYPVKTLDTPDVSNVKARYINRYYRNAHHLM 118
           EARKKAIDDMDPK+KEAFENI+FYKFYPVKT DTPDVSNVKA+YINRYYR+AHHLM
Sbjct: 291 EARKKAIDDMDPKVKEAFENIKFYKFYPVKTPDTPDVSNVKAKYINRYYRHAHHLM 346



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.134    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,277,770
Number of extensions: 96049
Number of successful extensions: 301
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 298
Number of HSP's successfully gapped: 2
Length of query: 118
Length of database: 17,035,801
Length adjustment: 85
Effective length of query: 33
Effective length of database: 12,597,611
Effective search space: 415721163
Effective search space used: 415721163
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 149 (62.0 bits)