BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0660400 Os04g0660400|AK071012
(347 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0660400 Similar to Amylogenin 724 0.0
Os03g0599800 Reversibly glycosylated polypeptide 322 2e-88
Os07g0604800 Similar to Alpha-1,4-glucan-protein synthase [... 313 1e-85
>Os04g0660400 Similar to Amylogenin
Length = 347
Score = 724 bits (1869), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/347 (100%), Positives = 347/347 (100%)
Query: 1 MSLEIQDSEVDIVIAALQPNLTTFFEAWRPFFSRFHIIVVKDPDMAEELQIPTGFDLKVY 60
MSLEIQDSEVDIVIAALQPNLTTFFEAWRPFFSRFHIIVVKDPDMAEELQIPTGFDLKVY
Sbjct: 1 MSLEIQDSEVDIVIAALQPNLTTFFEAWRPFFSRFHIIVVKDPDMAEELQIPTGFDLKVY 60
Query: 61 TKSDMGVLGATSIDFSGHSCRYFGYLVSRKKYVISIDDNCLPAKDNGGLTVDAVAQHMSN 120
TKSDMGVLGATSIDFSGHSCRYFGYLVSRKKYVISIDDNCLPAKDNGGLTVDAVAQHMSN
Sbjct: 61 TKSDMGVLGATSIDFSGHSCRYFGYLVSRKKYVISIDDNCLPAKDNGGLTVDAVAQHMSN 120
Query: 121 LKTPATPFFFNTLYDPFRKGADFVRGYPFSLREGVECMLSCGLWLHNADYDPMTHVVKRN 180
LKTPATPFFFNTLYDPFRKGADFVRGYPFSLREGVECMLSCGLWLHNADYDPMTHVVKRN
Sbjct: 121 LKTPATPFFFNTLYDPFRKGADFVRGYPFSLREGVECMLSCGLWLHNADYDPMTHVVKRN 180
Query: 181 QRNTTYVDAVMTVPLGAMMPVSGINVAFNREVLGPVMFPALRLRKEGKHRWDTLEDVWNG 240
QRNTTYVDAVMTVPLGAMMPVSGINVAFNREVLGPVMFPALRLRKEGKHRWDTLEDVWNG
Sbjct: 181 QRNTTYVDAVMTVPLGAMMPVSGINVAFNREVLGPVMFPALRLRKEGKHRWDTLEDVWNG 240
Query: 241 LCAKVVCDRLRYGVKTGLPYVMRSDAEAGKALESLKEWEGVKVMDVVLPFFESLKLSSTS 300
LCAKVVCDRLRYGVKTGLPYVMRSDAEAGKALESLKEWEGVKVMDVVLPFFESLKLSSTS
Sbjct: 241 LCAKVVCDRLRYGVKTGLPYVMRSDAEAGKALESLKEWEGVKVMDVVLPFFESLKLSSTS 300
Query: 301 VTVEDCVKELTSIVKEKLGPQNAIFAKAADAMEEWTKLWKSHGAQSA 347
VTVEDCVKELTSIVKEKLGPQNAIFAKAADAMEEWTKLWKSHGAQSA
Sbjct: 301 VTVEDCVKELTSIVKEKLGPQNAIFAKAADAMEEWTKLWKSHGAQSA 347
>Os03g0599800 Reversibly glycosylated polypeptide
Length = 364
Score = 322 bits (826), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 161/349 (46%), Positives = 229/349 (65%), Gaps = 9/349 (2%)
Query: 2 SLEIQDSEVDIVIAALQPNLTTFFEAWRPFFSRFHIIVVKDPDMAEELQIPTGFDLKVYT 61
S + E+DIVI ++ NL F E WRPFF +H+I+V+D D + +++P GFD ++Y
Sbjct: 14 STPLLKDELDIVIPTIR-NLD-FLEMWRPFFQPYHLIIVQDGDPTKTIRVPEGFDYELYN 71
Query: 62 KSDMG-VLG--ATSIDFSGHSCRYFGYLVSRKKYVISIDDNCLPAKDNGGLTVDAVAQHM 118
++D+ +LG A+ I F +CR FGY+VS+KKYV +IDD+C AKD G ++A+ QH+
Sbjct: 72 RNDINRILGPKASCISFKDSACRCFGYMVSKKKYVFTIDDDCFVAKDPSGKDINALEQHI 131
Query: 119 SNLKTPATPFFFNTLYDPFRKGADFVRGYPFSLREGVECMLSCGLWLHNADYDPMTHVVK 178
NL +P+TPFFFNTLYDP+R+GADFVRGYPFSLREG + +S GLWL+ DYD T +VK
Sbjct: 132 KNLLSPSTPFFFNTLYDPYREGADFVRGYPFSLREGAKTAVSHGLWLNIPDYDAPTQMVK 191
Query: 179 RNQRNTTYVDAVMTVPLGAMMPVSGINVAFNREVLGPVMFPALRLRKEGKHRWDTLEDVW 238
+RN+ YVDAVMTVP G + P+ G+N+AF+R+++GP M+ L + R+D D+W
Sbjct: 192 PRERNSRYVDAVMTVPKGTLFPMCGMNLAFDRDLIGPAMYFGLMGDGQPIGRYD---DMW 248
Query: 239 NGLCAKVVCDRLRYGVKTGLPYVMRSDAEAGKALESLKEWEGVKVMDVVLPFFESLKLSS 298
G C KV+CD L GVKTGLPY+ S A + + KE++G+ + ++PFF++ +
Sbjct: 249 AGWCMKVICDHLSLGVKTGLPYIWHSKA-SNPFVNLKKEYKGIFWQEDIIPFFQNATIPK 307
Query: 299 TSVTVEDCVKELTSIVKEKLGPQNAIFAKAADAMEEWTKLWKSHGAQSA 347
TV+ C L V+EKLG + F K ADAM W + W +A
Sbjct: 308 ECDTVQKCYLSLAEQVREKLGKIDPYFVKLADAMVTWIEAWDELNPSTA 356
>Os07g0604800 Similar to Alpha-1,4-glucan-protein synthase [UDP-forming] 1 (EC
2.4.1.112) (UDP- glucose:protein transglucosylase 1)
(UPTG 1)
Length = 366
Score = 313 bits (802), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 157/334 (47%), Positives = 220/334 (65%), Gaps = 9/334 (2%)
Query: 9 EVDIVIAALQPNLTTFFEAWRPFFSRFHIIVVKDPDMAEELQIPTGFDLKVYTKSDMG-V 67
E+DIVI ++ NL F E WRPFF +H+I+V+D D + +++P GFD ++Y + D+ +
Sbjct: 19 ELDIVIPTIR-NLD-FLEMWRPFFQPYHLIIVQDGDPKKTIRVPEGFDYELYNRDDINRI 76
Query: 68 LG--ATSIDFSGHSCRYFGYLVSRKKYVISIDDNCLPAKDNGGLTVDAVAQHMSNLKTPA 125
LG A+ I F +CR FGY+VS+KKY+ +IDD+C AKD G ++A+ QH+ NL P+
Sbjct: 77 LGPRASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLNPS 136
Query: 126 TPFFFNTLYDPFRKGADFVRGYPFSLREGVECMLSCGLWLHNADYDPMTHVVKRNQRNTT 185
TPFFFNTLYDP+R GADFVRGYPFSLREG +S GLWL+ DYD T +VK +RN+
Sbjct: 137 TPFFFNTLYDPYRDGADFVRGYPFSLREGAPTAVSHGLWLNIPDYDAPTQLVKPLERNSR 196
Query: 186 YVDAVMTVPLGAMMPVSGINVAFNREVLGPVMFPALRLRKEGKHRWDTLEDVWNGLCAKV 245
YVDAVMT+P G + P+ G+N+AF+R+++GP M+ L + R+D D+W G C KV
Sbjct: 197 YVDAVMTIPKGTLFPMCGMNLAFDRDLIGPAMYFGLMGDGQPIGRYD---DMWAGWCTKV 253
Query: 246 VCDRLRYGVKTGLPYVMRSDAEAGKALESLKEWEGVKVMDVVLPFFESLKLSSTSVTVED 305
+ D L GVKTGLPY+ S A + + KE+ G+ + ++PFF+S L + TV+
Sbjct: 254 ITDHLGLGVKTGLPYIWHSKA-SNPFVNLKKEYNGIFWQEELIPFFQSASLPKEADTVQK 312
Query: 306 CVKELTSIVKEKLGPQNAIFAKAADAMEEWTKLW 339
C EL V+ KLG + F K AD+M W + W
Sbjct: 313 CYLELAKQVRAKLGKVDGYFNKLADSMVTWIEAW 346
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.136 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,847,666
Number of extensions: 489104
Number of successful extensions: 1101
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1095
Number of HSP's successfully gapped: 3
Length of query: 347
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 245
Effective length of database: 11,709,973
Effective search space: 2868943385
Effective search space used: 2868943385
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 156 (64.7 bits)