Os04g0660400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Amylogenin; reversibly glycosylatable polypeptide (Amylogenin).
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Os04g0660400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Amylogenin; reversibly glycosylatable polypeptide (Amylogenin).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 14.07 | 0.176 | 12.7 | 0.0303 | 0.379 | -0.402 | -0.24 | -0.126 | 0.294 | 23.6 | 25.35 | 15 | -- | -- |
| 14.06 | 0.176 | 12.7 | 0.0423 | 0.377 | -0.415 | -0.224 | -- | 0.292 | 23.6 | 25.64 | 14 | -- | -- |
| 14.27 | 0.177 | 12.7 | 0.0617 | 0.377 | -0.413 | -- | 0.107 | 0.298 | 23.6 | 25.45 | 15 | -- | -- |
| 14.28 | 0.177 | 12.7 | 0.05 | 0.38 | -0.405 | -- | -- | 0.292 | 23.6 | 25.64 | 14 | -- | -- |
| 21.42 | 0.217 | 12.7 | 0.161 | -- | -0.702 | -- | 0.556 | 0.352 | -- | 24.65 | 3 | -- | -- |
| 16.66 | 0.191 | 12.7 | -0.0141 | 0.491 | -- | -0.143 | -- | 0.27 | 0.486 | -- | -- | -- | -- |
| 16.75 | 0.192 | 12.7 | -0.00863 | 0.491 | -- | -- | -- | 0.271 | 0.5 | -- | -- | -- | -- |
| 21.56 | 0.217 | 12.7 | 0.0965 | -- | -0.66 | -- | -- | 0.336 | -- | 24.6 | 7 | -- | -- |
| 14.34 | 0.177 | 12.7 | -- | 0.384 | -0.393 | -- | -- | 0.286 | 23.7 | 25.64 | 14 | -- | -- |
| 31.91 | 0.264 | 12.7 | 0.00837 | -- | -- | -- | -- | 0.279 | -- | -- | -- | -- | -- |
| 16.75 | 0.191 | 12.7 | -- | 0.491 | -- | -- | -- | 0.272 | 0.499 | -- | -- | -- | -- |
| 21.8 | 0.218 | 12.7 | -- | -- | -0.646 | -- | -- | 0.324 | -- | 24.6 | 7 | -- | -- |
| 31.91 | 0.264 | 12.7 | -- | -- | -- | -- | -- | 0.278 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 13.19 | temperature | 20 | 14400 | < th | dose independent | rect. | 12 | 15 |
| 2 | 13.20 | temperature | 20 | 14400 | < th | dose independent | rect. | 13 | 13 |
| 7 | 13.21 | temperature | 20 | 14400 | < th | dose independent | sin | 16 | NA |
| 22 | 13.23 | temperature | 20 | 14400 | > th | dose independent | rect. | 12 | 15 |
| 41 | 13.24 | temperature | 20 | 14400 | > th | dose independent | rect. | 4 | 21 |
| 43 | 13.25 | temperature | 20 | 14400 | > th | dose independent | sin | 16 | NA |
| 58 | 13.25 | temperature | 20 | 14400 | < th | dose independent | rect. | 5 | 21 |
| 117 | 13.28 | temperature | 20 | 14400 | > th | dose independent | rect. | 4 | 18 |
| 137 | 13.28 | temperature | 20 | 14400 | < th | dose independent | rect. | 24 | 22 |
| 192 | 13.30 | temperature | 20 | 14400 | > th | dose independent | no | NA | NA |
| 194 | 13.30 | temperature | 20 | 14400 | < th | dose independent | no | NA | NA |
| 204 | 13.30 | temperature | 20 | 14400 | < th | dose independent | rect. | 4 | 18 |
| 221 | 13.30 | temperature | 20 | 14400 | > th | dose independent | rect. | 24 | 22 |
| 223 | 13.30 | temperature | 20 | 14400 | < th | dose independent | rect. | 18 | 22 |
| 227 | 13.30 | temperature | 20 | 14400 | > th | dose independent | rect. | 18 | 23 |
| 252 | 13.31 | temperature | 20 | 14400 | > th | dose independent | rect. | 18 | 21 |
| 360 | 13.34 | temperature | 25 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 435 | 13.39 | temperature | 20 | 270 | > th | dose independent | rect. | 11 | 19 |
| 438 | 13.39 | temperature | 25 | 14400 | < th | dose dependent | rect. | 4 | 11 |
| 459 | 13.41 | temperature | 20 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 460 | 13.41 | temperature | 20 | 14400 | > th | dose independent | rect. | 21 | 4 |
| 475 | 13.41 | temperature | 25 | 14400 | < th | dose dependent | sin | 1 | NA |
| 492 | 13.42 | temperature | 20 | 270 | > th | dose independent | rect. | 15 | 15 |
| 525 | 13.44 | temperature | 20 | 270 | > th | dose independent | rect. | 13 | 17 |
| 597 | 13.48 | temperature | 20 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 665 | 13.50 | temperature | 25 | 14400 | < th | dose dependent | rect. | 9 | 18 |
| 700 | 13.51 | temperature | 25 | 14400 | < th | dose dependent | no | NA | NA |
| 705 | 13.51 | temperature | 25 | 14400 | < th | dose dependent | rect. | 9 | 16 |
| 743 | 13.52 | temperature | 25 | 14400 | < th | dose dependent | sin | 18 | NA |
| 749 | 13.52 | temperature | 25 | 14400 | < th | dose dependent | rect. | 11 | 14 |
| 781 | 13.53 | temperature | 25 | 14400 | < th | dose dependent | rect. | 11 | 11 |