BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0660400 Os04g0660400|AK071012
(347 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G16510.1 | chr5:5393296-5394342 FORWARD LENGTH=349 448 e-126
AT3G02230.1 | chr3:415463-417304 FORWARD LENGTH=358 336 1e-92
AT5G15650.1 | chr5:5092203-5094093 FORWARD LENGTH=361 330 5e-91
AT5G50750.1 | chr5:20641066-20642470 FORWARD LENGTH=365 315 3e-86
AT3G08900.1 | chr3:2708347-2709714 REVERSE LENGTH=363 314 6e-86
>AT5G16510.1 | chr5:5393296-5394342 FORWARD LENGTH=349
Length = 348
Score = 448 bits (1153), Expect = e-126, Method: Compositional matrix adjust.
Identities = 220/345 (63%), Positives = 268/345 (77%), Gaps = 6/345 (1%)
Query: 1 MSL-EIQDSEVDIVIAALQPNLTTFFEAWRPFFSRFHIIVVKDPDMAEELQIPTGFDLKV 59
MSL EI +EVDIVI AL +LT F +WRPFFS FH+IVVKDP++ EEL IP GFD+ V
Sbjct: 1 MSLAEINKNEVDIVIGALNADLTQFLTSWRPFFSGFHLIVVKDPELKEELNIPEGFDVDV 60
Query: 60 YTKSDM-GVLGAT-SIDFSGHSCRYFGYLVSRKKYVISIDDNCLPAKDNGGLTVDAVAQH 117
Y+K+DM V+GA+ S FSG+SCRYFGYLVS+KKY++SIDD+C+PAKD G VDAV QH
Sbjct: 61 YSKTDMEKVVGASNSTMFSGYSCRYFGYLVSKKKYIVSIDDDCVPAKDPKGFLVDAVTQH 120
Query: 118 MSNLKTPATPFFFNTLYDPFRKGADFVRGYPFSLREGVECMLSCGLWLHNADYDPMTHVV 177
+ NL+ PATP FFNTLYDP+ +GADFVRGYPFSLR GV C SCGLWL+ AD D T +
Sbjct: 121 VINLENPATPLFFNTLYDPYCEGADFVRGYPFSLRSGVPCAASCGLWLNLADLDAPTQAL 180
Query: 178 KRNQRNTTYVDAVMTVPLGAMMPVSGINVAFNREVLGPVMFPALRLRKEGKHRWDTLEDV 237
K +RNT YVDAVMTVP AM+P+SGIN+AFNRE++GP + PALRL EGK RW+TLEDV
Sbjct: 181 KTEKRNTAYVDAVMTVPAKAMLPISGINIAFNRELVGPALVPALRLAGEGKVRWETLEDV 240
Query: 238 WNGLCAKVVCDRLRYGVKTGLPYVMRSDAEAGKALESL-KEWEGVKVMDVVLPFFESLKL 296
W G+C K + D L YGVKTGLPYV R+ E G A+ESL K+WEG+K+M+ +PFF+SLKL
Sbjct: 241 WCGMCLKHISDHLGYGVKTGLPYVWRN--ERGDAVESLRKKWEGMKLMEKSVPFFDSLKL 298
Query: 297 SSTSVTVEDCVKELTSIVKEKLGPQNAIFAKAADAMEEWTKLWKS 341
T++ VEDCV EL VKE+LG + F +AADAM +W +LW S
Sbjct: 299 PETALKVEDCVIELAKAVKEQLGSDDPAFTQAADAMVKWVQLWNS 343
>AT3G02230.1 | chr3:415463-417304 FORWARD LENGTH=358
Length = 357
Score = 336 bits (861), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 166/334 (49%), Positives = 230/334 (68%), Gaps = 9/334 (2%)
Query: 9 EVDIVIAALQPNLTTFFEAWRPFFSRFHIIVVKDPDMAEELQIPTGFDLKVYTKSDMG-V 67
E+DIVI ++ NL F E WRPF +H+I+V+D D ++ + +P GFD ++Y ++D+ +
Sbjct: 21 ELDIVIPTIR-NLD-FLEMWRPFLQPYHLIIVQDGDPSKTIAVPEGFDYELYNRNDINRI 78
Query: 68 LG--ATSIDFSGHSCRYFGYLVSRKKYVISIDDNCLPAKDNGGLTVDAVAQHMSNLKTPA 125
LG A+ I F +CR FGY+VS+KKY+ +IDD+C AKD G V+A+ QH+ NL P+
Sbjct: 79 LGPKASCISFKDSACRCFGYMVSKKKYIFTIDDDCFVAKDPSGKAVNALEQHIKNLLCPS 138
Query: 126 TPFFFNTLYDPFRKGADFVRGYPFSLREGVECMLSCGLWLHNADYDPMTHVVKRNQRNTT 185
TPFFFNTLYDP+R+GADFVRGYPFSLREGV +S GLWL+ DYD T +VK +RNT
Sbjct: 139 TPFFFNTLYDPYREGADFVRGYPFSLREGVSTAVSHGLWLNIPDYDAPTQLVKPKERNTR 198
Query: 186 YVDAVMTVPLGAMMPVSGINVAFNREVLGPVMFPALRLRKEGKHRWDTLEDVWNGLCAKV 245
YVDAVMT+P G + P+ G+N+AF+RE++GP M+ L + R+D D+W G C KV
Sbjct: 199 YVDAVMTIPKGTLFPMCGMNLAFDRELIGPAMYFGLMGDGQPIGRYD---DMWAGWCIKV 255
Query: 246 VCDRLRYGVKTGLPYVMRSDAEAGKALESLKEWEGVKVMDVVLPFFESLKLSSTSVTVED 305
+CD L GVKTGLPY+ S A + + KE++G+ + ++PFF+S KL+ +VTV+
Sbjct: 256 ICDHLGLGVKTGLPYIYHSKA-SNPFVNLKKEYKGIFWQEDIIPFFQSAKLTKEAVTVQQ 314
Query: 306 CVKELTSIVKEKLGPQNAIFAKAADAMEEWTKLW 339
C EL+ +VKEKL P + F K ADAM W + W
Sbjct: 315 CYMELSKLVKEKLSPIDPYFDKLADAMVTWIEAW 348
>AT5G15650.1 | chr5:5092203-5094093 FORWARD LENGTH=361
Length = 360
Score = 330 bits (847), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 163/342 (47%), Positives = 232/342 (67%), Gaps = 9/342 (2%)
Query: 9 EVDIVIAALQPNLTTFFEAWRPFFSRFHIIVVKDPDMAEELQIPTGFDLKVYTKSDMG-V 67
E+DIVI ++ NL F E WRPF +H+I+V+D D ++++ +P G+D ++Y ++D+ +
Sbjct: 21 ELDIVIPTIR-NLD-FLEMWRPFLQPYHLIIVQDGDPSKKIHVPEGYDYELYNRNDINRI 78
Query: 68 LG--ATSIDFSGHSCRYFGYLVSRKKYVISIDDNCLPAKDNGGLTVDAVAQHMSNLKTPA 125
LG A+ I F +CR FGY+VS+KKY+ +IDD+C AKD G V+A+ QH+ NL P+
Sbjct: 79 LGPKASCISFKDSACRCFGYMVSKKKYIFTIDDDCFVAKDPSGKAVNALEQHIKNLLCPS 138
Query: 126 TPFFFNTLYDPFRKGADFVRGYPFSLREGVECMLSCGLWLHNADYDPMTHVVKRNQRNTT 185
+PFFFNTLYDP+R+GADFVRGYPFSLREGV +S GLWL+ DYD T +VK +RNT
Sbjct: 139 SPFFFNTLYDPYREGADFVRGYPFSLREGVSTAVSHGLWLNIPDYDAPTQLVKPKERNTR 198
Query: 186 YVDAVMTVPLGAMMPVSGINVAFNREVLGPVMFPALRLRKEGKHRWDTLEDVWNGLCAKV 245
YVDAVMT+P G + P+ G+N+AF+R+++GP M+ L + R+D D+W G C KV
Sbjct: 199 YVDAVMTIPKGTLFPMCGMNLAFDRDLIGPAMYFGLMGDGQPIGRYD---DMWAGWCIKV 255
Query: 246 VCDRLRYGVKTGLPYVMRSDAEAGKALESLKEWEGVKVMDVVLPFFESLKLSSTSVTVED 305
+CD L GVKTGLPY+ S A + + KE++G+ + ++PFF++ KLS +VTV+
Sbjct: 256 ICDHLSLGVKTGLPYIYHSKA-SNPFVNLKKEYKGIFWQEEIIPFFQNAKLSKEAVTVQQ 314
Query: 306 CVKELTSIVKEKLGPQNAIFAKAADAMEEWTKLWKSHGAQSA 347
C EL+ +VKEKL + F K ADAM W + W +A
Sbjct: 315 CYIELSKMVKEKLSSLDPYFDKLADAMVTWIEAWDELNPPAA 356
>AT5G50750.1 | chr5:20641066-20642470 FORWARD LENGTH=365
Length = 364
Score = 315 bits (806), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 155/336 (46%), Positives = 224/336 (66%), Gaps = 9/336 (2%)
Query: 9 EVDIVIAALQPNLTTFFEAWRPFFSRFHIIVVKDPDMAEELQIPTGFDLKVYTKSDMG-V 67
++DIVI ++ F E WRPF +H+I+V+D D + ++++P G+D ++Y ++D+ +
Sbjct: 17 DLDIVIPTIRS--LDFLEQWRPFLHHYHLIIVQDGDPSIKIRVPEGYDYELYNRNDINRI 74
Query: 68 LG--ATSIDFSGHSCRYFGYLVSRKKYVISIDDNCLPAKDNGGLTVDAVAQHMSNLKTPA 125
LG A I + CR FG++VS+KKY+ +IDD+C AKD G ++ +AQH+ NL+TP+
Sbjct: 75 LGPRANCISYKDGGCRCFGFMVSKKKYIYTIDDDCFVAKDPSGKDINVIAQHIKNLETPS 134
Query: 126 TPFFFNTLYDPFRKGADFVRGYPFSLREGVECMLSCGLWLHNADYDPMTHVVKRNQRNTT 185
TP +FNTLYDPFR G DFVRGYPFSLREGV+ +S GLWL+ DYD T +VK +RNT
Sbjct: 135 TPHYFNTLYDPFRDGTDFVRGYPFSLREGVQTAISHGLWLNIPDYDAPTQLVKPRERNTR 194
Query: 186 YVDAVMTVPLGAMMPVSGINVAFNREVLGPVMFPALRLRKEGKHRWDTLEDVWNGLCAKV 245
YVDAVMT+P + P+ G+N+AFNRE++GP M+ L + R+D D+W G AKV
Sbjct: 195 YVDAVMTIPKRVLYPMCGMNLAFNRELVGPAMYFGLMGEGQPISRYD---DMWAGWAAKV 251
Query: 246 VCDRLRYGVKTGLPYVMRSDAEAGKALESLKEWEGVKVMDVVLPFFESLKLSSTSVTVED 305
VCD L +GVKTGLPY+ S A + + KE +G+ + ++PFF++L+LS S T
Sbjct: 252 VCDHLGFGVKTGLPYLWHSKA-SNPFVNLKKEHKGLHWQEDMVPFFQNLRLSKESDTAAK 310
Query: 306 CVKELTSIVKEKLGPQNAIFAKAADAMEEWTKLWKS 341
C E++++ KEKL + F K ADAM W + W+
Sbjct: 311 CYMEISNMTKEKLTKVDPYFEKLADAMVVWIEAWEE 346
>AT3G08900.1 | chr3:2708347-2709714 REVERSE LENGTH=363
Length = 362
Score = 314 bits (804), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 154/335 (45%), Positives = 223/335 (66%), Gaps = 9/335 (2%)
Query: 9 EVDIVIAALQPNLTTFFEAWRPFFSRFHIIVVKDPDMAEELQIPTGFDLKVYTKSDMG-V 67
E+DIVI ++ NL F E WRPFF ++H+I+V+D D ++ + IP GFD ++Y ++D+ +
Sbjct: 17 ELDIVIPTIR-NLD-FLEMWRPFFEQYHLIIVQDGDPSKVINIPVGFDYELYNRNDINRI 74
Query: 68 LG--ATSIDFSGHSCRYFGYLVSRKKYVISIDDNCLPAKDNGGLTVDAVAQHMSNLKTPA 125
LG A+ I F +CR FGY+VS+KKY+ +IDD+C AKD G ++A+ QH+ NL +P+
Sbjct: 75 LGPKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPTGKEINALEQHIKNLLSPS 134
Query: 126 TPFFFNTLYDPFRKGADFVRGYPFSLREGVECMLSCGLWLHNADYDPMTHVVKRNQRNTT 185
TP FFNTLYDP+R GADFVRGYPFS+REG +S GLWL+ DYD T +VK ++N+
Sbjct: 135 TPHFFNTLYDPYRDGADFVRGYPFSMREGAITAVSHGLWLNIPDYDAPTQLVKPLEKNSR 194
Query: 186 YVDAVMTVPLGAMMPVSGINVAFNREVLGPVMFPALRLRKEGKHRWDTLEDVWNGLCAKV 245
YVDAVMT+P G + P+ G+N+AF+RE++GP M+ L + R+D D+W G C KV
Sbjct: 195 YVDAVMTIPKGTLFPMCGMNLAFDRELIGPAMYFGLMGDGQPIGRYD---DMWAGWCVKV 251
Query: 246 VCDRLRYGVKTGLPYVMRSDAEAGKALESLKEWEGVKVMDVVLPFFESLKLSSTSVTVED 305
+CD + +GVKTGLPY+ S A + + KE+ G+ + +PFF+S+ L +V+
Sbjct: 252 ICDHMGWGVKTGLPYIWHSKA-SNPFVNLKKEYNGIFWQEEAIPFFQSVTLPKECTSVQQ 310
Query: 306 CVKELTSIVKEKLGPQNAIFAKAADAMEEWTKLWK 340
C EL +V+EKLG + F A M W + W+
Sbjct: 311 CYLELAKLVREKLGKVDPYFITLATGMVTWIEAWE 345
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.136 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,766,994
Number of extensions: 328461
Number of successful extensions: 715
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 701
Number of HSP's successfully gapped: 5
Length of query: 347
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 248
Effective length of database: 8,392,385
Effective search space: 2081311480
Effective search space used: 2081311480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 112 (47.8 bits)