BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0652900 Os04g0652900|AK071125
         (244 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0652900  Peptidyl-tRNA hydrolase, PTH2 domain containin...   335   2e-92
Os05g0520200  Thioredoxin-related domain containing protein       103   1e-22

>Os04g0652900 Peptidyl-tRNA hydrolase, PTH2 domain containing protein
          Length = 244

 Score =  335 bits (859), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 176/244 (72%), Positives = 176/244 (72%)

Query: 1   MGASASVLSLXXXXXXXXXXXXXXXXXGCFALGYFLALSRFPRQVVAASPASGXXXXXXX 60
           MGASASVLSL                 GCFALGYFLALSRFPRQVVAASPASG       
Sbjct: 1   MGASASVLSLPTAAAIPGAATAIAGAAGCFALGYFLALSRFPRQVVAASPASGETSDEDS 60

Query: 61  XXXXXXXXXXXNXXXXXXXXXXXXXXXXXXLFWARNVVTKSDXXXXXXXXXXXXXXXPLE 120
                      N                  LFWARNVVTKSD               PLE
Sbjct: 61  EEDSEEDDDDENSGRSRAAKRAPKRAGLRLLFWARNVVTKSDSAKEAERAKARTAASPLE 120

Query: 121 VENLAEIIEDFKMVLVVRNDLKMGKGKIAAQCSHATLGLFKKLQQRAPKSLRRWERCGQV 180
           VENLAEIIEDFKMVLVVRNDLKMGKGKIAAQCSHATLGLFKKLQQRAPKSLRRWERCGQV
Sbjct: 121 VENLAEIIEDFKMVLVVRNDLKMGKGKIAAQCSHATLGLFKKLQQRAPKSLRRWERCGQV 180

Query: 181 KVVVKIESEEDMLVLQGRAKSLNIPTHITIDAGRTQIAPNSRTVMAILGPADMVDDVTGG 240
           KVVVKIESEEDMLVLQGRAKSLNIPTHITIDAGRTQIAPNSRTVMAILGPADMVDDVTGG
Sbjct: 181 KVVVKIESEEDMLVLQGRAKSLNIPTHITIDAGRTQIAPNSRTVMAILGPADMVDDVTGG 240

Query: 241 LKLL 244
           LKLL
Sbjct: 241 LKLL 244



>Os05g0520200 Thioredoxin-related domain containing protein
          Length = 204

 Score =  103 bits (257), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 57/119 (47%), Positives = 80/119 (67%), Gaps = 5/119 (4%)

Query: 129 EDFKMVLVVRNDLKMGKGKIAAQCSHATLGLFKKLQQRAPKSLRRWERCGQVKVVVKIES 188
           E+ KMVLVVR DLKM  GKIA+QC+HA  GL+ +L       LR+WE+ GQ K+V+  ++
Sbjct: 88  EELKMVLVVRKDLKMRAGKIASQCAHAATGLYAELMASNRGLLRQWEQFGQAKIVLTCKN 147

Query: 189 EEDMLVLQGRAKSLNIPTHITIDAGRTQIAPNSRTVMAILGP---ADMVDDVTGGLKLL 244
           +++M  ++  A+   IPT +  DAGRTQ+   S+TV+A+ GP   AD +D VTG L LL
Sbjct: 148 QQEMNRIKETAEHRGIPTFVVADAGRTQVQAGSKTVLAV-GPGRKAD-IDSVTGKLSLL 204



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.135    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,189,554
Number of extensions: 150967
Number of successful extensions: 315
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 313
Number of HSP's successfully gapped: 2
Length of query: 244
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 146
Effective length of database: 11,918,829
Effective search space: 1740149034
Effective search space used: 1740149034
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 154 (63.9 bits)