Os04g0652900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidyl-tRNA hydrolase, PTH2 domain containing protein.
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Os04g0652900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidyl-tRNA hydrolase, PTH2 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.33 | 0.246 | 11.4 | -0.246 | 0.567 | 0.745 | -0.0731 | 0.274 | 0.0404 | 16.9 | 18 | 109 | -- | -- |
| 27.3 | 0.245 | 11.4 | -0.282 | 0.602 | 0.754 | 0.0278 | -- | 0.024 | 17.3 | 18.38 | 107 | -- | -- |
| 27.26 | 0.245 | 11.4 | -0.255 | 0.602 | 0.754 | -- | 0.173 | 0.032 | 17.3 | 18.18 | 107 | -- | -- |
| 27.3 | 0.245 | 11.4 | -0.284 | 0.602 | 0.761 | -- | -- | 0.0238 | 17.3 | 18.18 | 107 | -- | -- |
| 39.24 | 0.292 | 11.4 | -0.381 | -- | 1.19 | -- | 0.141 | -0.0469 | -- | 18.6 | 151 | -- | -- |
| 35.14 | 0.278 | 11.3 | -0.12 | 0.811 | -- | 0.16 | -- | 0.15 | 16.4 | -- | -- | -- | -- |
| 35.21 | 0.278 | 11.3 | -0.119 | 0.812 | -- | -- | -- | 0.151 | 16.4 | -- | -- | -- | -- |
| 39.25 | 0.292 | 11.4 | -0.409 | -- | 1.19 | -- | -- | -0.0577 | -- | 18.7 | 150 | -- | -- |
| 29.24 | 0.253 | 11.4 | -- | 0.634 | 0.653 | -- | -- | 0.0709 | 17.1 | 18.18 | 107 | -- | -- |
| 70.54 | 0.392 | 11.3 | -0.151 | -- | -- | -- | -- | 0.129 | -- | -- | -- | -- | -- |
| 35.58 | 0.279 | 11.3 | -- | 0.814 | -- | -- | -- | 0.164 | 16.4 | -- | -- | -- | -- |
| 43.35 | 0.307 | 11.4 | -- | -- | 1.08 | -- | -- | 0.00103 | -- | 19.2 | 145 | -- | -- |
| 71.14 | 0.394 | 11.3 | -- | -- | -- | -- | -- | 0.146 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 26.11 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 22 |
| 2 | 26.33 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 22 |
| 4 | 26.35 | temperature | 15 | 90 | > th | dose dependent | sin | 6 | NA |
| 16 | 26.60 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 13 |
| 25 | 26.73 | temperature | 30 | 90 | < th | dose dependent | sin | 6 | NA |
| 26 | 26.75 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 22 |
| 52 | 26.96 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 13 |
| 59 | 26.99 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 87 | 27.12 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 16 |
| 93 | 27.14 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 22 |
| 175 | 27.45 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 14 |
| 181 | 27.48 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 216 | 27.60 | temperature | 15 | 90 | > th | dose dependent | no | NA | NA |
| 245 | 27.71 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 270 | 27.77 | temperature | 20 | 270 | < th | dose independent | rect. | 23 | 9 |
| 305 | 27.84 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 321 | 27.88 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 10 |
| 325 | 27.89 | temperature | 20 | 270 | < th | dose independent | rect. | 23 | 21 |
| 337 | 27.93 | temperature | 20 | 270 | > th | dose independent | sin | 7 | NA |
| 369 | 27.99 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 390 | 28.04 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 10 |
| 392 | 28.04 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 399 | 28.06 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 416 | 28.07 | temperature | 20 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 417 | 28.08 | temperature | 20 | 270 | < th | dose independent | sin | 7 | NA |
| 437 | 28.10 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 438 | 28.10 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 451 | 28.11 | temperature | 20 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 455 | 28.12 | temperature | 20 | 1440 | > th | dose independent | sin | 9 | NA |
| 465 | 28.13 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 6 |
| 469 | 28.13 | temperature | 20 | 270 | > th | dose independent | rect. | 4 | 23 |
| 484 | 28.15 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 501 | 28.16 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 508 | 28.17 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 509 | 28.17 | temperature | 20 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 605 | 28.26 | temperature | 20 | 1440 | < th | dose independent | sin | 9 | NA |
| 695 | 28.33 | temperature | 20 | 30 | > th | dose dependent | rect. | 11 | 23 |
| 809 | 28.42 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 3 |
| 907 | 28.47 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 929 | 28.47 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 19 |
| 943 | 28.48 | temperature | 25 | 270 | < th | dose independent | rect. | 9 | 23 |