Os05g0520200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Thioredoxin-related domain containing protein.
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Os05g0520200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Thioredoxin-related domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20.81 | 0.214 | 9.51 | -0.906 | 0.494 | -0.214 | 0.145 | -0.00732 | -0.169 | 17.1 | 22.21 | 78 | -- | -- |
| 20.81 | 0.212 | 9.51 | -0.907 | 0.494 | -0.214 | 0.143 | -- | -0.169 | 17.1 | 22.24 | 78 | -- | -- |
| 20.86 | 0.213 | 9.51 | -0.904 | 0.496 | -0.218 | -- | 0.0267 | -0.169 | 17 | 22.23 | 78 | -- | -- |
| 20.86 | 0.213 | 9.51 | -0.905 | 0.495 | -0.219 | -- | -- | -0.168 | 17 | 22.23 | 78 | -- | -- |
| 31.99 | 0.263 | 9.51 | -0.946 | -- | -0.189 | -- | 0.313 | -0.196 | -- | 41.87 | 49 | -- | -- |
| 22.06 | 0.22 | 9.52 | -0.92 | 0.45 | -- | 0.339 | -- | -0.185 | 18.2 | -- | -- | -- | -- |
| 22.32 | 0.221 | 9.52 | -0.923 | 0.452 | -- | -- | -- | -0.183 | 18.1 | -- | -- | -- | -- |
| 32.14 | 0.264 | 9.51 | -0.941 | -- | -0.193 | -- | -- | -0.195 | -- | 41.86 | 49 | -- | -- |
| 41.64 | 0.301 | 9.47 | -- | 0.537 | -0.283 | -- | -- | -0.0584 | 16.5 | 20.01 | 84 | -- | -- |
| 32.91 | 0.268 | 9.51 | -0.936 | -- | -- | -- | -- | -0.193 | -- | -- | -- | -- | -- |
| 44.78 | 0.313 | 9.49 | -- | 0.466 | -- | -- | -- | -0.0802 | 18 | -- | -- | -- | -- |
| 54.97 | 0.346 | 9.49 | -- | -- | -0.114 | -- | -- | -0.0897 | -- | 20.01 | 84 | -- | -- |
| 56.02 | 0.349 | 9.49 | -- | -- | -- | -- | -- | -0.0894 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.62 | radiation | 20 | 90 | < th | dose independent | rect. | 9 | 8 |
| 3 | 19.67 | radiation | 40 | 90 | < th | dose dependent | sin | 2 | NA |
| 5 | 19.68 | radiation | 30 | 90 | < th | dose dependent | rect. | 9 | 8 |
| 11 | 19.74 | radiation | 20 | 10 | < th | dose independent | rect. | 9 | 10 |
| 13 | 19.74 | radiation | 40 | 270 | < th | dose dependent | sin | 5 | NA |
| 15 | 19.75 | radiation | 40 | 90 | < th | dose independent | sin | 3 | NA |
| 18 | 19.77 | radiation | 40 | 270 | < th | dose independent | sin | 6 | NA |
| 24 | 19.79 | radiation | 20 | 90 | < th | dose independent | sin | 1 | NA |
| 26 | 19.79 | radiation | 40 | 90 | < th | dose independent | rect. | 3 | 14 |
| 38 | 19.82 | radiation | 40 | 10 | < th | dose dependent | sin | 1 | NA |
| 48 | 19.83 | radiation | 40 | 90 | < th | dose independent | rect. | 3 | 12 |
| 79 | 19.91 | radiation | 40 | 90 | < th | dose independent | sin | 21 | NA |
| 81 | 19.91 | radiation | 20 | 270 | < th | dose independent | rect. | 1 | 13 |
| 85 | 19.91 | radiation | 40 | 10 | < th | dose dependent | rect. | 4 | 12 |
| 96 | 19.92 | radiation | 40 | 90 | < th | dose dependent | rect. | 3 | 14 |
| 101 | 19.93 | radiation | 40 | 270 | < th | dose independent | rect. | 1 | 14 |
| 108 | 19.94 | radiation | 40 | 270 | < th | dose independent | rect. | 23 | 16 |
| 111 | 19.94 | radiation | 40 | 90 | < th | dose dependent | rect. | 3 | 12 |
| 128 | 19.97 | radiation | 20 | 10 | < th | dose independent | rect. | 9 | 7 |
| 131 | 19.97 | radiation | 40 | 270 | < th | dose dependent | rect. | 1 | 13 |
| 132 | 19.97 | radiation | 40 | 10 | < th | dose dependent | rect. | 4 | 15 |
| 150 | 19.99 | radiation | 40 | 270 | < th | dose independent | rect. | 21 | 20 |
| 164 | 20.01 | radiation | 30 | 90 | < th | dose independent | rect. | 11 | 8 |
| 254 | 20.06 | radiation | 40 | 270 | < th | dose dependent | rect. | 23 | 15 |
| 263 | 20.07 | radiation | 40 | 10 | < th | dose dependent | rect. | 11 | 8 |
| 289 | 20.10 | radiation | 40 | 720 | < th | dose independent | sin | 11 | NA |
| 359 | 20.14 | humidity | 60 | 10 | > th | dose independent | rect. | 4 | 13 |
| 536 | 20.24 | humidity | 60 | 10 | > th | dose independent | rect. | 4 | 15 |
| 553 | 20.25 | radiation | 40 | 720 | < th | dose independent | rect. | 17 | 16 |
| 603 | 20.27 | wind | 1 | 43200 | < th | dose dependent | rect. | 6 | 2 |
| 680 | 20.31 | radiation | 20 | 720 | < th | dose independent | rect. | 9 | 1 |
| 704 | 20.31 | humidity | 50 | 10 | > th | dose dependent | rect. | 4 | 13 |
| 806 | 20.35 | radiation | 40 | 720 | < th | dose dependent | rect. | 20 | 15 |
| 810 | 20.36 | atmosphere | 1010 | 90 | < th | dose independent | rect. | 18 | 9 |
| 817 | 20.36 | radiation | 20 | 720 | < th | dose independent | rect. | 20 | 15 |
| 841 | 20.37 | radiation | 40 | 720 | < th | dose independent | rect. | 20 | 14 |
| 950 | 20.41 | humidity | 60 | 90 | > th | dose independent | sin | 4 | NA |