BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0645100 Os04g0645100|AK072140
(1200 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0645100 Tetratricopeptide-like helical domain containi... 2303 0.0
Os02g0255700 Conserved hypothetical protein 451 e-126
Os02g0717400 Tetratricopeptide-like helical domain containi... 350 3e-96
>Os04g0645100 Tetratricopeptide-like helical domain containing protein
Length = 1200
Score = 2303 bits (5967), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1118/1175 (95%), Positives = 1118/1175 (95%)
Query: 26 EEKVVPSAIDVTVVTPYESQVTLKGISTDRVLDVRKLLGSNVETCHLTNYSLSHVTRGQR 85
EEKVVPSAIDVTVVTPYESQVTLKGISTDRVLDVRKLLGSNVETCHLTNYSLSHVTRGQR
Sbjct: 26 EEKVVPSAIDVTVVTPYESQVTLKGISTDRVLDVRKLLGSNVETCHLTNYSLSHVTRGQR 85
Query: 86 LEDGVEIVSLKPCSLTIVXXXXXXXXXXXXQVRRLLDIVACTTAFVNKPRDGAKHKSSKH 145
LEDGVEIVSLKPCSLTIV QVRRLLDIVACTTAFVNKPRDGAKHKSSKH
Sbjct: 86 LEDGVEIVSLKPCSLTIVEEEYATEAAAAAQVRRLLDIVACTTAFVNKPRDGAKHKSSKH 145
Query: 146 XXXXXXXXXXXXXXXXXXXXXXXXXXXXISEAHDMAAIRPPPRLGEFYDFLSFAHLTPPV 205
ISEAHDMAAIRPPPRLGEFYDFLSFAHLTPPV
Sbjct: 146 ARPATPPSPPALAASPDAHGAGAAQAPPISEAHDMAAIRPPPRLGEFYDFLSFAHLTPPV 205
Query: 206 HFIRRKESNGASQEGDYFEIEVKVCNGKLLHIVASVKGFYSAGKPHTVSHSLVDLLQQLS 265
HFIRRKESNGASQEGDYFEIEVKVCNGKLLHIVASVKGFYSAGKPHTVSHSLVDLLQQLS
Sbjct: 206 HFIRRKESNGASQEGDYFEIEVKVCNGKLLHIVASVKGFYSAGKPHTVSHSLVDLLQQLS 265
Query: 266 SAFANAYDALMKAFLDHNKFGNLPYGFRANTWLIPPIYLDSATKCPALPVEDENWXXXXX 325
SAFANAYDALMKAFLDHNKFGNLPYGFRANTWLIPPIYLDSATKCPALPVEDENW
Sbjct: 266 SAFANAYDALMKAFLDHNKFGNLPYGFRANTWLIPPIYLDSATKCPALPVEDENWGGNGG 325
Query: 326 XXXXXXXXXXXXWAKEFSTLARMPCKTEEGRVIRDRKAFLLHNLFVDTAIFRAASTIQRL 385
WAKEFSTLARMPCKTEEGRVIRDRKAFLLHNLFVDTAIFRAASTIQRL
Sbjct: 326 GNGRDGKYDRRRWAKEFSTLARMPCKTEEGRVIRDRKAFLLHNLFVDTAIFRAASTIQRL 385
Query: 386 IDLSGNSTSQQAGLDGSLAIEERVGDLLITVKRDQADASLKLEDKVDGVALYQTGSMDIS 445
IDLSGNSTSQQAGLDGSLAIEERVGDLLITVKRDQADASLKLEDKVDGVALYQTGSMDIS
Sbjct: 386 IDLSGNSTSQQAGLDGSLAIEERVGDLLITVKRDQADASLKLEDKVDGVALYQTGSMDIS 445
Query: 446 QRNLLKGLTSDESVVVKDTSILGVVIVKHCGYTATVKVSGRTKDGNGGKQTSDICDHLDG 505
QRNLLKGLTSDESVVVKDTSILGVVIVKHCGYTATVKVSGRTKDGNGGKQTSDICDHLDG
Sbjct: 446 QRNLLKGLTSDESVVVKDTSILGVVIVKHCGYTATVKVSGRTKDGNGGKQTSDICDHLDG 505
Query: 506 ISNVDVDDLPDGGSNALNINSLRISLPKIVNSDIASTQCPTPQSHVDNHARKLVRKILED 565
ISNVDVDDLPDGGSNALNINSLRISLPKIVNSDIASTQCPTPQSHVDNHARKLVRKILED
Sbjct: 506 ISNVDVDDLPDGGSNALNINSLRISLPKIVNSDIASTQCPTPQSHVDNHARKLVRKILED 565
Query: 566 SLMKLENMPANNPRTIRWELGSSWLQNLQKKDSPASEDKKNAGHVEKETTIKGLGKHFEQ 625
SLMKLENMPANNPRTIRWELGSSWLQNLQKKDSPASEDKKNAGHVEKETTIKGLGKHFEQ
Sbjct: 566 SLMKLENMPANNPRTIRWELGSSWLQNLQKKDSPASEDKKNAGHVEKETTIKGLGKHFEQ 625
Query: 626 LKKIKKKECHVEGAMSEKEDSDSNCSVINGMEESENTKETDISKLMSEDDFCRLKDLGAG 685
LKKIKKKECHVEGAMSEKEDSDSNCSVINGMEESENTKETDISKLMSEDDFCRLKDLGAG
Sbjct: 626 LKKIKKKECHVEGAMSEKEDSDSNCSVINGMEESENTKETDISKLMSEDDFCRLKDLGAG 685
Query: 686 LHQKSLEELTMMAHKFYDDTALPKLVADFASLELSPVDGRTMTDFMHTRGLNMCSLGRVV 745
LHQKSLEELTMMAHKFYDDTALPKLVADFASLELSPVDGRTMTDFMHTRGLNMCSLGRVV
Sbjct: 686 LHQKSLEELTMMAHKFYDDTALPKLVADFASLELSPVDGRTMTDFMHTRGLNMCSLGRVV 745
Query: 746 ELAEKLPHIQSICIHEMVIRSFKHIVRAVIAAVDDMQNMSAAIAETLNILLGCPRLESGT 805
ELAEKLPHIQSICIHEMVIRSFKHIVRAVIAAVDDMQNMSAAIAETLNILLGCPRLESGT
Sbjct: 746 ELAEKLPHIQSICIHEMVIRSFKHIVRAVIAAVDDMQNMSAAIAETLNILLGCPRLESGT 805
Query: 806 ETDAHSEHNLRFRWVERFLSKRYNWKLKDEFAHLRKFIILRGLCSKVGLELVARDYDMNS 865
ETDAHSEHNLRFRWVERFLSKRYNWKLKDEFAHLRKFIILRGLCSKVGLELVARDYDMNS
Sbjct: 806 ETDAHSEHNLRFRWVERFLSKRYNWKLKDEFAHLRKFIILRGLCSKVGLELVARDYDMNS 865
Query: 866 PNPFDKSDIVNIIPVCKHVVYSSIDGRNLLESSKMALDKGKLDDAVNFGTKALSKIVAVC 925
PNPFDKSDIVNIIPVCKHVVYSSIDGRNLLESSKMALDKGKLDDAVNFGTKALSKIVAVC
Sbjct: 866 PNPFDKSDIVNIIPVCKHVVYSSIDGRNLLESSKMALDKGKLDDAVNFGTKALSKIVAVC 925
Query: 926 GPYHRLTANAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPETMKSYGDLSVFY 985
GPYHRLTANAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPETMKSYGDLSVFY
Sbjct: 926 GPYHRLTANAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPETMKSYGDLSVFY 985
Query: 986 YRLQHIEMALKYVNRALYLLQFSCGLSHPNSAATYINVAMMEEGMGNVHVALRYLHEALK 1045
YRLQHIEMALKYVNRALYLLQFSCGLSHPNSAATYINVAMMEEGMGNVHVALRYLHEALK
Sbjct: 986 YRLQHIEMALKYVNRALYLLQFSCGLSHPNSAATYINVAMMEEGMGNVHVALRYLHEALK 1045
Query: 1046 CNKRLLGADHIQTAASYHAIAIALSMMDAYSLSVQHEQTTLQILQEKLGQDDLRTQDAAA 1105
CNKRLLGADHIQTAASYHAIAIALSMMDAYSLSVQHEQTTLQILQEKLGQDDLRTQDAAA
Sbjct: 1046 CNKRLLGADHIQTAASYHAIAIALSMMDAYSLSVQHEQTTLQILQEKLGQDDLRTQDAAA 1105
Query: 1106 WLEYFESKALEQQEAARRGIPKPDSSIASKGHLSVSDLLDYISPDQERKERDTQRKGRRA 1165
WLEYFESKALEQQEAARRGIPKPDSSIASKGHLSVSDLLDYISPDQERKERDTQRKGRRA
Sbjct: 1106 WLEYFESKALEQQEAARRGIPKPDSSIASKGHLSVSDLLDYISPDQERKERDTQRKGRRA 1165
Query: 1166 KNNIRAHQGELVEEKESFEHDIGSPHEANKEEFQQ 1200
KNNIRAHQGELVEEKESFEHDIGSPHEANKEEFQQ
Sbjct: 1166 KNNIRAHQGELVEEKESFEHDIGSPHEANKEEFQQ 1200
>Os02g0255700 Conserved hypothetical protein
Length = 645
Score = 451 bits (1161), Expect = e-126, Method: Compositional matrix adjust.
Identities = 241/512 (47%), Positives = 314/512 (61%), Gaps = 21/512 (4%)
Query: 29 VVPSAIDVTVVTPYESQVTLKGISTDRVLDVRKLLGSNVETCHLTNYSLSHVTRGQRLED 88
V+P+ +DVTV TP +Q+TLKGISTD++LDVRKLL +V+TCHLTNYSLSH RG +L+D
Sbjct: 24 VLPTVLDVTVETPDYTQLTLKGISTDKILDVRKLLAVHVDTCHLTNYSLSHEVRGAQLKD 83
Query: 89 GVEIVSLKPCSLTIVXXXXXXXXXXXXQVRRLLDIVACTTAFVNKPRDGAKHKSSKHXXX 148
VE+ SLKPC ++IV VRRLLDIVACT AF PR A +
Sbjct: 84 TVEVASLKPCHVSIVEEGYTEELAVA-HVRRLLDIVACTAAF--GPRKSAPEQKPASPSS 140
Query: 149 XXXXXXXXXXXXXXXXXXXXXXXXXISEAHDMA-----AIRPPPRLGEFYDFLSFAHLTP 203
+ PPP+LG+FY+F SF+HL+P
Sbjct: 141 PDAPPPPPPPASPDAAKTPGSPAGGGGGVGAGGGGGEEPMYPPPKLGQFYEFFSFSHLSP 200
Query: 204 PVHFIRRKESNGASQ--EGDYFEIEVKVCNGKLLHIVASVKGFYSAGKPHTVSHSLVDLL 261
P+H+IRR E D+F+I+V+VC+GK + IVAS GFY AGK +SHSLV LL
Sbjct: 201 PLHYIRRSTRPFVDDKTEDDFFQIDVRVCSGKPVTIVASKAGFYPAGKRALISHSLVGLL 260
Query: 262 QQLSSAFANAYDALMKAFLDHNKFGNLPYGFRANTWLIPPIYLDSATKCPALPVEDENWX 321
QQ S AF AY ALMKAF++HNKFGNLPYGFR+NTW++PP D + P LP EDE W
Sbjct: 261 QQTSRAFDGAYKALMKAFVEHNKFGNLPYGFRSNTWVVPPAVADLPSVFPPLPTEDETWG 320
Query: 322 XXXXXXXXXXXXXXXXWAKEFSTLARMPCKTEEGRVIRDRKAFLLHNLFVDTAIFRAAST 381
WAKEF+ LA MPCKT E R IRDRKAFLLH+LFVD A+ +A +
Sbjct: 321 SNGGGQGRDGKHDHRPWAKEFAILAAMPCKTAEERQIRDRKAFLLHSLFVDVAVLKAVAA 380
Query: 382 IQRLIDLSGNSTSQQAGLDGSLAIEERVGDLLITVKRDQADASLKLEDKVDGVALYQTGS 441
IQ+++ + + + L ++ +GD+ ITV +D+ADAS KL+ K+DG S
Sbjct: 381 IQQMVPDKSSLETPNDTTNPDLHTQQ-IGDMKITVTKDKADASSKLDVKLDGSQAPGMLS 439
Query: 442 MDISQRNLLKGLTSDESVVVKDTSILGVVIVKHCGYTATVKVSGRTKDGNGGKQTSDICD 501
++++RNLLKG+T+DES V DT+ LGVV+VKHCGYTA V+V + T +
Sbjct: 440 DELAKRNLLKGITADESATVHDTATLGVVVVKHCGYTAVVQVPADAQ-----LTTVSLAQ 494
Query: 502 HLDGISNVDVDDLPDGGSNALNINSLRISLPK 533
H ++D++D P+GGSNALN+NSLR+ L K
Sbjct: 495 H-----DIDIEDQPEGGSNALNVNSLRMLLHK 521
>Os02g0717400 Tetratricopeptide-like helical domain containing protein
Length = 1426
Score = 350 bits (899), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 194/526 (36%), Positives = 300/526 (57%), Gaps = 47/526 (8%)
Query: 649 NCSVINGMEESENTKETDISKLMSEDDFCRLKDLGAGLHQKSLEELTMMAHKFYDDTALP 708
+ S E +E+T E L + + F K G+ + E L + DT +P
Sbjct: 742 DSSATKPAEHNESTAEI----LFNPNVFTEYKLAGSPEEIAADEALVKKVGSYLLDTVIP 797
Query: 709 KLVADFASLELSPVDGRTMTDFMHTRGLNMCSLGRVVELAEKLPHIQSICIHEMVIRSFK 768
K V D SL++SP+DG+T+TD +H+ G+N+ LG+V ++ + LPH++ + E+++RS K
Sbjct: 798 KFVQDLCSLDVSPMDGQTLTDVLHSNGINVRYLGKVADMIKHLPHLRGLLSSEIIVRSAK 857
Query: 769 HIVRAVIAAVDDMQNMSAAIAETLNILLG---CP-----------RLESGTE-------- 806
H+V+ ++ D ++ AIA LN +G P + + G E
Sbjct: 858 HVVKEILRQSAD-HDIGPAIAHFLNCFIGNVLAPSTKGSVDSTDTKTQKGHEKTQNQKSA 916
Query: 807 ----------------TDAHSEHNLRFRWVERFLSKRYNWKLKDEF-AHLRKFIILRGLC 849
T +H + + ++ F +Y +++ D+ ++ +LR LC
Sbjct: 917 EGQKSSLSASSKNIVPTFSHLTSDGIWSNIKEFAKHKYLFEVTDDAKTGAKRVAVLRNLC 976
Query: 850 SKVGLELVARDYDMNSPNPFDKSDIVNIIPVCKHVVYSSIDGRNLLESSKMALDKGKLDD 909
KVG+ + +R YD+++ PF SDI+N+ PV KH V D RNL+E+ K+ + +G L++
Sbjct: 977 QKVGITIASRKYDLDAAAPFQPSDILNLQPVVKHSVPVCTDARNLMEAGKIRMAEGTLNE 1036
Query: 910 AVNFGTKALSKIVAVCGPYHRLTANAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 969
A ++A S + + GP H+ AN LA+VLYH GD A + Q + L INER LGL
Sbjct: 1037 AYALFSEAFSLLQQITGPMHKDAANCCRYLAMVLYHAGDIPGAIVQQHRELIINERCLGL 1096
Query: 970 DHPETMKSYGDLSVFYYRLQHIEMALKYVNRALYLLQFSCGLSHPNSAATYINVAMMEEG 1029
DHP+T SYG++++FY+ L E+AL++++R L LL + G +HP+ AAT INVAMM +
Sbjct: 1097 DHPDTAHSYGNMALFYHGLNQTELALRHMSRTLLLLSLASGPNHPDVAATLINVAMMYQD 1156
Query: 1030 MGNVHVALRYLHEALKCNKRLLGADHIQTAASYHAIAIALSMMDAYSLSVQHEQTTLQIL 1089
GN+ ALRYL EAL N+RLLG DHIQTA YHA+AIA S M A+ LS+QHE+ T IL
Sbjct: 1157 AGNMSTALRYLQEALTKNERLLGPDHIQTAICYHALAIAFSCMGAFKLSIQHEKKTYDIL 1216
Query: 1090 QEKLGQDDLRTQDAAAWLEYFESKALE---QQEAARRGIPKPDSSI 1132
++LG DD RT+DA +WL F+S+ + Q++ ++G P + I
Sbjct: 1217 VKQLGSDDSRTKDAESWLNTFKSREQQVNAQKQKGQQGTNPPANPI 1262
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.133 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 37,254,612
Number of extensions: 1519474
Number of successful extensions: 3948
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 3934
Number of HSP's successfully gapped: 5
Length of query: 1200
Length of database: 17,035,801
Length adjustment: 112
Effective length of query: 1088
Effective length of database: 11,187,833
Effective search space: 12172362304
Effective search space used: 12172362304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 162 (67.0 bits)