Os04g0645100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Tetratricopeptide-like helical domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os04g0645100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Tetratricopeptide-like helical domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 46.11 | 0.319 | 13.4 | -0.155 | 0.736 | -0.522 | 0.506 | -0.749 | -0.412 | 6.83 | 0.3478 | 6192 | -- | -- |
| 46.28 | 0.317 | 13.4 | -0.115 | 0.732 | -0.656 | 0.521 | -- | -0.416 | 6.82 | 0.4197 | 6337 | -- | -- |
| 46.75 | 0.318 | 13.4 | -0.147 | 0.737 | -0.522 | -- | -0.716 | -0.413 | 6.89 | 0.3533 | 6230 | -- | -- |
| 46.88 | 0.319 | 13.4 | -0.118 | 0.737 | -0.658 | -- | -- | -0.417 | 6.9 | 0.4199 | 6340 | -- | -- |
| 75.31 | 0.404 | 13.4 | -0.14 | -- | -0.496 | -- | -0.692 | -0.391 | -- | 0.3483 | 6230 | -- | -- |
| 56.35 | 0.352 | 13.4 | -0.33 | 0.739 | -- | 0.446 | -- | -0.345 | 6.91 | -- | -- | -- | -- |
| 56.86 | 0.353 | 13.4 | -0.322 | 0.74 | -- | -- | -- | -0.346 | 6.95 | -- | -- | -- | -- |
| 75.27 | 0.404 | 13.4 | -0.106 | -- | -0.674 | -- | -- | -0.407 | -- | 0.4013 | 6230 | -- | -- |
| 47.22 | 0.32 | 13.4 | -- | 0.73 | -0.691 | -- | -- | -0.412 | 6.91 | 0.4309 | 6340 | -- | -- |
| 85.58 | 0.432 | 13.4 | -0.307 | -- | -- | -- | -- | -0.332 | -- | -- | -- | -- | -- |
| 59.59 | 0.361 | 13.3 | -- | 0.736 | -- | -- | -- | -0.31 | 6.98 | -- | -- | -- | -- |
| 75.54 | 0.405 | 13.4 | -- | -- | -0.704 | -- | -- | -0.398 | -- | 0.4129 | 6230 | -- | -- |
| 88.06 | 0.438 | 13.4 | -- | -- | -- | -- | -- | -0.298 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 45.24 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 7 | 17 |
| 2 | 45.54 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 8 | 17 |
| 3 | 45.62 | temperature | 30.0 | 90 | < th | dose independent | rect. | 12 | 19 |
| 5 | 45.79 | radiation | 10.0 | 90 | > th | dose independent | sin | 5 | NA |
| 6 | 45.83 | humidity | 60.0 | 90 | > th | dose independent | rect. | 12 | 19 |
| 9 | 45.89 | radiation | 20.0 | 10 | < th | dose dependent | sin | 4 | NA |
| 16 | 46.15 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 12 | 19 |
| 17 | 46.16 | radiation | 10.0 | 10 | > th | dose independent | sin | 4 | NA |
| 18 | 46.17 | precipitation | 0.1 | 4320 | > th | dose dependent | sin | 0 | NA |
| 19 | 46.21 | radiation | 10.0 | 90 | > th | dose independent | rect. | 17 | 20 |
| 20 | 46.23 | radiation | 20.0 | 90 | < th | dose dependent | sin | 5 | NA |
| 26 | 46.32 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 19 | 7 |
| 29 | 46.35 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 12 | 20 |
| 32 | 46.37 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 12 | 7 |
| 39 | 46.42 | radiation | 10.0 | 90 | < th | dose independent | rect. | 1 | 16 |
| 43 | 46.46 | radiation | 10.0 | 90 | > th | dose independent | rect. | 6 | 7 |
| 44 | 46.46 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 12 | 7 |
| 58 | 46.46 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 12 | 7 |
| 59 | 46.48 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 12 | 19 |
| 70 | 46.54 | radiation | 10.0 | 270 | < th | dose dependent | sin | 9 | NA |
| 74 | 46.57 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 4 | 14 |
| 79 | 46.58 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 1 | 17 |
| 83 | 46.59 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 18 | 17 |
| 87 | 46.60 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 3 | 16 |
| 91 | 46.63 | radiation | 10.0 | 10 | > th | dose independent | rect. | 16 | 22 |
| 93 | 46.67 | radiation | 10.0 | 10 | > th | dose independent | rect. | 7 | 7 |
| 94 | 46.67 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 4 | 14 |
| 95 | 46.67 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 4 | 14 |
| 114 | 46.69 | radiation | 10.0 | 90 | < th | dose independent | sin | 5 | NA |
| 145 | 46.79 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 3 |
| 149 | 46.80 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 13 | 19 |
| 153 | 46.81 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 12 | 8 |
| 169 | 46.85 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 7 | 5 |
| 193 | 46.90 | radiation | 10.0 | 10 | > th | dose independent | rect. | 7 | 5 |
| 200 | 46.90 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 4 | 20 |
| 213 | 46.92 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 22 | 21 |
| 243 | 46.95 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 12 | 14 |
| 245 | 46.95 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 9 | 17 |
| 278 | 46.99 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 7 | 5 |
| 280 | 46.99 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 1 | 16 |
| 288 | 47.00 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 7 | 2 |
| 294 | 47.02 | precipitation | 0.1 | 4320 | > th | dose independent | sin | 23 | NA |
| 312 | 47.06 | precipitation | 0.1 | 4320 | < th | dose independent | sin | 23 | NA |
| 314 | 47.06 | precipitation | 0.1 | 4320 | < th | dose dependent | sin | 23 | NA |
| 347 | 47.11 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 1 | 15 |
| 362 | 47.14 | temperature | 30.0 | 270 | < th | dose independent | rect. | 11 | 7 |
| 443 | 47.25 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 19 | 23 |
| 455 | 47.27 | humidity | 90.0 | 90 | < th | dose independent | rect. | 7 | 5 |
| 468 | 47.29 | radiation | 1.0 | 270 | > th | dose independent | rect. | 7 | 2 |
| 473 | 47.30 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 13 | 19 |
| 481 | 47.31 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 1 | 17 |
| 482 | 47.31 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 12 | 18 |
| 501 | 47.32 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 9 | 21 |
| 512 | 47.34 | radiation | 10.0 | 10 | < th | dose independent | rect. | 1 | 15 |
| 527 | 47.35 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 16 | 5 |
| 557 | 47.37 | precipitation | 0.1 | 4320 | > th | dose dependent | no | NA | NA |
| 570 | 47.38 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 13 | 19 |
| 573 | 47.38 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 16 | 23 |
| 582 | 47.40 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 17 | 3 |
| 583 | 47.40 | humidity | 90.0 | 10 | < th | dose independent | rect. | 7 | 6 |
| 593 | 47.41 | radiation | 10.0 | 10 | < th | dose independent | sin | 4 | NA |
| 601 | 47.43 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 16 | 5 |
| 606 | 47.43 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 16 | 5 |
| 621 | 47.46 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 17 | 3 |
| 623 | 47.46 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 17 | 3 |
| 638 | 47.47 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 22 | 14 |
| 663 | 47.51 | temperature | 20.0 | 10 | > th | dose dependent | sin | 5 | NA |
| 699 | 47.54 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 12 | 19 |
| 720 | 47.55 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 22 | 20 |
| 740 | 47.57 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 21 | 15 |
| 763 | 47.60 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 22 | 16 |
| 776 | 47.62 | radiation | 10.0 | 270 | > th | dose independent | sin | 10 | NA |
| 777 | 47.62 | radiation | 10.0 | 270 | < th | dose independent | sin | 10 | NA |
| 841 | 47.67 | radiation | 10.0 | 90 | < th | dose independent | rect. | 24 | 10 |
| 852 | 47.68 | radiation | 40.0 | 90 | < th | dose independent | rect. | 12 | 19 |
| 944 | 47.77 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 22 | 10 |