BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0644900 Os04g0644900|AK062763
         (86 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0644900  C2 domain containing protein                        179   5e-46
Os08g0300200  C2 domain containing protein                        134   2e-32

>Os04g0644900 C2 domain containing protein
          Length = 86

 Score =  179 bits (453), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 86/86 (100%), Positives = 86/86 (100%)

Query: 1  WNQTFDFVVEDGLHDMLMLEVYDHDTFSRDYMGRCILTLTKVLIEEDYKDSFKLEGAKSG 60
          WNQTFDFVVEDGLHDMLMLEVYDHDTFSRDYMGRCILTLTKVLIEEDYKDSFKLEGAKSG
Sbjct: 1  WNQTFDFVVEDGLHDMLMLEVYDHDTFSRDYMGRCILTLTKVLIEEDYKDSFKLEGAKSG 60

Query: 61 KLNLHLKWSPQPIFRDSREEDSLRFR 86
          KLNLHLKWSPQPIFRDSREEDSLRFR
Sbjct: 61 KLNLHLKWSPQPIFRDSREEDSLRFR 86



>Os08g0300200 C2 domain containing protein
          Length = 501

 Score =  134 bits (337), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 56/76 (73%), Positives = 70/76 (92%)

Query: 1   WNQTFDFVVEDGLHDMLMLEVYDHDTFSRDYMGRCILTLTKVLIEEDYKDSFKLEGAKSG 60
           WNQTFDFVVED LHD+LM+EV+DHDTF +DY+GRCILTLT+V++E +++D F L+GAKSG
Sbjct: 421 WNQTFDFVVEDALHDLLMVEVWDHDTFGKDYIGRCILTLTRVILEGEFQDEFVLQGAKSG 480

Query: 61  KLNLHLKWSPQPIFRD 76
           KLNLH KW+PQPI+RD
Sbjct: 481 KLNLHFKWTPQPIYRD 496



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.140    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,974,169
Number of extensions: 102204
Number of successful extensions: 206
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 206
Number of HSP's successfully gapped: 2
Length of query: 86
Length of database: 17,035,801
Length adjustment: 56
Effective length of query: 30
Effective length of database: 14,111,817
Effective search space: 423354510
Effective search space used: 423354510
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 149 (62.0 bits)