Os04g0644900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : C2 domain containing protein.
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Os04g0644900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : C2 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 78.2 | 0.415 | 8.21 | -1.21 | 1.89 | -0.66 | -0.0563 | -0.411 | -0.705 | 6.07 | 1.35 | 34 | -- | -- |
| 79.03 | 0.417 | 8.21 | -1.22 | 1.82 | -0.65 | -0.0517 | -- | -0.707 | 6.1 | 1.35 | 34 | -- | -- |
| 78.18 | 0.412 | 8.21 | -1.22 | 1.9 | -0.664 | -- | -0.404 | -0.705 | 6.06 | 1.304 | 36 | -- | -- |
| 79.03 | 0.417 | 8.21 | -1.22 | 1.82 | -0.647 | -- | -- | -0.707 | 6.11 | 1.35 | 34 | -- | -- |
| 247.56 | 0.737 | 8.24 | -1.17 | -- | -0.806 | -- | -0.27 | -0.667 | -- | 1.29 | 29 | -- | -- |
| 88.08 | 0.44 | 8.19 | -1.18 | 2.08 | -- | 0.246 | -- | -0.688 | 7.54 | -- | -- | -- | -- |
| 88.25 | 0.44 | 8.19 | -1.18 | 2.08 | -- | -- | -- | -0.688 | 7.53 | -- | -- | -- | -- |
| 248.03 | 0.737 | 8.24 | -1.17 | -- | -0.808 | -- | -- | -0.668 | -- | 1.29 | 29 | -- | -- |
| 116.86 | 0.503 | 8.18 | -- | 1.93 | -0.685 | -- | -- | -0.605 | 6.06 | 4.24 | 56 | -- | -- |
| 319.13 | 0.835 | 8.24 | -1.15 | -- | -- | -- | -- | -0.656 | -- | -- | -- | -- | -- |
| 124.7 | 0.522 | 8.16 | -- | 2.07 | -- | -- | -- | -0.557 | 7.57 | -- | -- | -- | -- |
| 283.74 | 0.787 | 8.22 | -- | -- | -0.81 | -- | -- | -0.562 | -- | 3.74 | 23 | -- | -- |
| 353.73 | 0.878 | 8.21 | -- | -- | -- | -- | -- | -0.529 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 72.37 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 7 | 21 |
| 2 | 73.07 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 9 | 19 |
| 23 | 74.61 | radiation | 1.0 | 90 | < th | dose independent | rect. | 5 | 23 |
| 24 | 74.69 | temperature | 30.0 | 270 | < th | dose independent | rect. | 6 | 21 |
| 26 | 74.73 | radiation | 1.0 | 30 | < th | dose independent | sin | 13 | NA |
| 30 | 74.84 | radiation | 10.0 | 270 | < th | dose independent | rect. | 9 | 17 |
| 31 | 74.84 | radiation | 1.0 | 90 | < th | dose independent | rect. | 7 | 21 |
| 36 | 74.96 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 9 | 19 |
| 40 | 75.02 | radiation | 1.0 | 90 | < th | dose independent | rect. | 9 | 19 |
| 55 | 75.30 | radiation | 10.0 | 90 | < th | dose dependent | sin | 13 | NA |
| 59 | 75.38 | radiation | 10.0 | 10 | < th | dose dependent | sin | 12 | NA |
| 64 | 75.40 | radiation | 1.0 | 30 | > th | dose independent | sin | 13 | NA |
| 86 | 75.67 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 15 | 12 |
| 89 | 75.71 | humidity | 70.0 | 270 | > th | dose independent | rect. | 7 | 19 |
| 95 | 75.81 | temperature | 30.0 | 270 | < th | dose independent | rect. | 15 | 11 |
| 125 | 76.13 | radiation | 1.0 | 30 | > th | dose independent | rect. | 14 | 19 |
| 134 | 76.26 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 15 | 11 |
| 190 | 76.61 | radiation | 10.0 | 270 | < th | dose independent | rect. | 15 | 11 |
| 192 | 76.62 | humidity | 70.0 | 90 | > th | dose independent | rect. | 9 | 19 |
| 194 | 76.63 | humidity | 70.0 | 270 | > th | dose independent | rect. | 16 | 10 |
| 199 | 76.66 | radiation | 1.0 | 90 | < th | dose independent | rect. | 17 | 11 |
| 210 | 76.73 | humidity | 80.0 | 10 | > th | dose independent | rect. | 7 | 22 |
| 247 | 76.92 | humidity | 70.0 | 90 | > th | dose independent | rect. | 11 | 17 |
| 267 | 77.03 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 7 | 7 |
| 310 | 77.23 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 6 | 21 |
| 324 | 77.27 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 14 | 19 |
| 327 | 77.29 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 14 | 18 |
| 344 | 77.34 | humidity | 70.0 | 90 | > th | dose independent | rect. | 13 | 15 |
| 407 | 77.54 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 17 | 10 |
| 432 | 77.60 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 13 | 19 |
| 462 | 77.66 | humidity | 90.0 | 90 | < th | dose dependent | rect. | 13 | 19 |
| 485 | 77.72 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 12 | 6 |
| 535 | 77.84 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 12 | 21 |
| 536 | 77.85 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 17 | 11 |
| 540 | 77.88 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 14 |
| 542 | 77.88 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 14 |
| 558 | 77.92 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 13 | 8 |
| 567 | 77.94 | radiation | 40.0 | 270 | < th | dose independent | rect. | 7 | 6 |
| 569 | 77.94 | radiation | 1.0 | 30 | > th | dose independent | rect. | 12 | 21 |
| 572 | 77.95 | humidity | 50.0 | 10 | > th | dose independent | rect. | 9 | 5 |
| 597 | 78.02 | temperature | 30.0 | 270 | > th | dose independent | rect. | 12 | 6 |
| 603 | 78.04 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 7 | 5 |
| 640 | 78.12 | humidity | 70.0 | 270 | > th | dose independent | rect. | 7 | 7 |
| 641 | 78.12 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 6 | 20 |
| 643 | 78.12 | humidity | 90.0 | 90 | < th | dose dependent | rect. | 13 | 8 |
| 652 | 78.13 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 7 | 12 |
| 665 | 78.15 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 14 | 8 |
| 681 | 78.20 | humidity | 90.0 | 270 | < th | dose dependent | rect. | 11 | 10 |
| 690 | 78.23 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 7 | 18 |
| 695 | 78.24 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 17 | 9 |
| 696 | 78.24 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 7 | 5 |
| 723 | 78.29 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 9 | 6 |
| 729 | 78.30 | temperature | 30.0 | 270 | < th | dose independent | rect. | 7 | 12 |
| 731 | 78.30 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 13 | 17 |
| 736 | 78.30 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 17 | 14 |
| 737 | 78.30 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 13 | 17 |
| 756 | 78.34 | wind | 5.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 777 | 78.36 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 14 | 6 |
| 817 | 78.40 | radiation | 1.0 | 30 | < th | dose dependent | no | NA | NA |
| 822 | 78.40 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 11 | 21 |
| 828 | 78.40 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 829 | 78.40 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 835 | 78.41 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 856 | 78.44 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 7 | 7 |
| 881 | 78.48 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 13 | 19 |
| 903 | 78.51 | wind | 1.0 | 4320 | < th | dose independent | rect. | 4 | 2 |
| 912 | 78.52 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 9 | 5 |
| 919 | 78.53 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 9 | 5 |
| 927 | 78.54 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 14 | 8 |
| 940 | 78.56 | wind | 1.0 | 4320 | > th | dose independent | rect. | 4 | 2 |
| 949 | 78.57 | wind | 9.0 | 270 | < th | dose dependent | rect. | 3 | 3 |