BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0644600 Os04g0644600|AK105846
(392 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0644600 Epoxide hydrolase family protein 702 0.0
Os01g0919700 Epoxide hydrolase family protein 155 4e-38
Os10g0498300 Similar to Epoxide hydrolase 67 2e-11
>Os04g0644600 Epoxide hydrolase family protein
Length = 392
Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/344 (100%), Positives = 344/344 (100%)
Query: 49 LVVAASGSKDETAEGKKQEEESEFNPFGFVTDNPSSRGAIQLPESPAQDGNVGQMLYRIE 108
LVVAASGSKDETAEGKKQEEESEFNPFGFVTDNPSSRGAIQLPESPAQDGNVGQMLYRIE
Sbjct: 49 LVVAASGSKDETAEGKKQEEESEFNPFGFVTDNPSSRGAIQLPESPAQDGNVGQMLYRIE 108
Query: 109 DKGREFGSRVKSGKLRWFVRETGSAGARRGTVVFIHGAPSQSFSYRMVMSQMADAGYHCF 168
DKGREFGSRVKSGKLRWFVRETGSAGARRGTVVFIHGAPSQSFSYRMVMSQMADAGYHCF
Sbjct: 109 DKGREFGSRVKSGKLRWFVRETGSAGARRGTVVFIHGAPSQSFSYRMVMSQMADAGYHCF 168
Query: 169 APDWIGFGFSDMPQPGYGFDYTEEEFHKSLDELLSTLNITEPFFLVVQGFLVGSYGLTWA 228
APDWIGFGFSDMPQPGYGFDYTEEEFHKSLDELLSTLNITEPFFLVVQGFLVGSYGLTWA
Sbjct: 169 APDWIGFGFSDMPQPGYGFDYTEEEFHKSLDELLSTLNITEPFFLVVQGFLVGSYGLTWA 228
Query: 229 LKNSSKVLKVAILNSPLTVSSPVPGLFNQLRLPLFGEFTCQNAVLAERFIEAGSPYVLKS 288
LKNSSKVLKVAILNSPLTVSSPVPGLFNQLRLPLFGEFTCQNAVLAERFIEAGSPYVLKS
Sbjct: 229 LKNSSKVLKVAILNSPLTVSSPVPGLFNQLRLPLFGEFTCQNAVLAERFIEAGSPYVLKS 288
Query: 289 EKADVYRLPYLSSGAPGFALLEAARKANFRDVLSRISAGFASNSWEKPILLAWGISDKYL 348
EKADVYRLPYLSSGAPGFALLEAARKANFRDVLSRISAGFASNSWEKPILLAWGISDKYL
Sbjct: 289 EKADVYRLPYLSSGAPGFALLEAARKANFRDVLSRISAGFASNSWEKPILLAWGISDKYL 348
Query: 349 PLPIAEEFQKGNPAAIKLEPIEGAGHMPQEDWPEKVVTALRSFL 392
PLPIAEEFQKGNPAAIKLEPIEGAGHMPQEDWPEKVVTALRSFL
Sbjct: 349 PLPIAEEFQKGNPAAIKLEPIEGAGHMPQEDWPEKVVTALRSFL 392
>Os01g0919700 Epoxide hydrolase family protein
Length = 379
Score = 155 bits (393), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 97/281 (34%), Positives = 155/281 (55%), Gaps = 11/281 (3%)
Query: 116 SRVKSGKLRWFVRETGSAGARRGTVVFIHGAPSQSFSYRMVMSQMADAGYHCFAPDWIGF 175
S+ + RWF E GS+ V+FIHG PSQ++SYR V+ ++D YH A DW+GF
Sbjct: 104 SQSSNDVFRWFCVEAGSSS--NPPVLFIHGFPSQAYSYRNVLPVVSD-NYHAIAFDWLGF 160
Query: 176 GFSDMPQPGYGFDYTEEEFHKSLDELLSTLNITEPFFLVVQGFLVGSYGLTWALKNSSKV 235
GFSD PQP YGFDYT +E+ SL+ L++ + + +VVQG+ + +A ++ K+
Sbjct: 161 GFSDKPQPDYGFDYTLDEYTSSLESLINAV-APDKLSIVVQGYF-APIVIKYANEHQDKL 218
Query: 236 LKVAILNSPLT-VSSPVPGLFNQLRLPLFGEFTCQNAVLA-ERFIEAGSPYVLKSEKADV 293
+ ++N P+T + +P L GE Q+ + A ++ + + PY++K E A V
Sbjct: 219 NHLILVNPPITDKHAKLPSTLACFSNFLLGEIFSQDPLRASDKALTSSGPYMMKEEDAMV 278
Query: 294 YRLPYLSSGAPGFAL--LEAARKANFRDVLSRISAGFASNSWEKPILLAWGISDKYLPLP 351
YR PYL SG+ GFAL + A K + + + + +S+SW+ + WG+ D++L
Sbjct: 279 YRRPYLVSGSSGFALNAISRAMKKDLKVYIESMRNILSSDSWKTKTTVCWGLRDRWLNYD 338
Query: 352 IAEEFQKGNPAAIKLEPIEGAGHMPQEDWPEKVVTALRSFL 392
E+F A K+ + AGH QED E++ ++ L
Sbjct: 339 GVEDF--CGSANYKILELPMAGHHVQEDRGEELGKLVKRIL 377
>Os10g0498300 Similar to Epoxide hydrolase
Length = 332
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 77/289 (26%), Positives = 119/289 (41%), Gaps = 43/289 (14%)
Query: 138 GTVVFIHGAPSQSFSYRMVMSQMADAGYHCFAPDWIGFGFSDMPQPGYGFDYTEEEFHKS 197
GTVVF+HG P +S+R M +A AGY APDW G+G SD P + E+
Sbjct: 46 GTVVFLHGFPEIWYSWRHQMLAVAAAGYRAVAPDWRGYGLSDQPP-----EPEAAEYDDL 100
Query: 198 LDELLSTLNITEPFFLVVQGFLVG-SYG----LTWALKNSSKVLKVAILNSPLTVSS--- 249
+++LL+ L+ V + FLVG +G ++AL + ++ V L P V+S
Sbjct: 101 VEDLLAILDA----LAVPKAFLVGKDFGAMPAYSFALCHPNRTCGVMCLGIPFGVNSSSL 156
Query: 250 -PVPGLFNQLRLPL-------FGEFTCQNAVLAERFIEAGSPYVLKSEKADVYRLPYLSS 301
+P F LR FG++ + V + + + + E ++ L LS+
Sbjct: 157 NTLPEGFYILRWAQPGRAEADFGKYDIRRVVRTIYILFSRNEIPIAKEDQEIMDLADLST 216
Query: 302 GAPGFALLEAA-------RKANFRDVLSRISAGFASN------SWEKPILLAWGISDKYL 348
P + E K+ FR L N ++ P+ + G D
Sbjct: 217 PLPEWFSEEDLDVYSSLYEKSGFRYPLQMPYRSMHQNKPIGDAKFQVPVFVVMGEKDYVF 276
Query: 349 PLPIAEEFQKG-----NPAAIKLEPIEGAGHMPQEDWPEKVVTALRSFL 392
+P E K + +K+ I H QE +PE V L SFL
Sbjct: 277 KIPGIESVMKDGSMEKHAPDLKITYIPEGSHFVQEQFPEFVNELLLSFL 325
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.136 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,488,859
Number of extensions: 550731
Number of successful extensions: 1301
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1298
Number of HSP's successfully gapped: 3
Length of query: 392
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 289
Effective length of database: 11,657,759
Effective search space: 3369092351
Effective search space used: 3369092351
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)