BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0629000 Os04g0629000|AK059832
(299 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0629000 Conserved hypothetical protein 407 e-114
Os04g0672800 Conserved hypothetical protein 204 7e-53
>Os04g0629000 Conserved hypothetical protein
Length = 299
Score = 407 bits (1046), Expect = e-114, Method: Compositional matrix adjust.
Identities = 210/286 (73%), Positives = 210/286 (73%)
Query: 14 DGTIYTSPPPNXXXXXXXXXXXXXXXXXXXXXXXYSDRLPFDLDRQKLRSXXXXXXXXXX 73
DGTIYTSPPPN YSDRLPFDLDRQKLRS
Sbjct: 14 DGTIYTSPPPNLLLLLLLLLAVAAASGRARVSGRYSDRLPFDLDRQKLRSFTTLAAITIT 73
Query: 74 XXXXWKLLXXXXXXXXXXXXXXXXXXXXXXXXXXXGALXXXXXXXXXXXXRAQEAINQLF 133
WKLL GAL RAQEAINQLF
Sbjct: 74 LIFAWKLLRAPQEQPRRPRRRVAPSPSNTSSRSRPGALTSTDACSSSADSRAQEAINQLF 133
Query: 134 QPVNLTLEQLVRHKLSEGRRVTCRLLGVILEETTPEELQNHVTVRPSVLEVLLEIAKFCD 193
QPVNLTLEQLVRHKLSEGRRVTCRLLGVILEETTPEELQNHVTVRPSVLEVLLEIAKFCD
Sbjct: 134 QPVNLTLEQLVRHKLSEGRRVTCRLLGVILEETTPEELQNHVTVRPSVLEVLLEIAKFCD 193
Query: 194 VYLMERILDDESGEKVLSALSEAGLFTNSGLIKDKVLFCSTENGRTSFVRQLEPDWHIDT 253
VYLMERILDDESGEKVLSALSEAGLFTNSGLIKDKVLFCSTENGRTSFVRQLEPDWHIDT
Sbjct: 194 VYLMERILDDESGEKVLSALSEAGLFTNSGLIKDKVLFCSTENGRTSFVRQLEPDWHIDT 253
Query: 254 SPEIVHQLARFIKYQLHISPQRAERVASNVFSSTSLEQFFGGLDQR 299
SPEIVHQLARFIKYQLHISPQRAERVASNVFSSTSLEQFFGGLDQR
Sbjct: 254 SPEIVHQLARFIKYQLHISPQRAERVASNVFSSTSLEQFFGGLDQR 299
>Os04g0672800 Conserved hypothetical protein
Length = 253
Score = 204 bits (519), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 99/160 (61%), Positives = 123/160 (76%)
Query: 134 QPVNLTLEQLVRHKLSEGRRVTCRLLGVILEETTPEELQNHVTVRPSVLEVLLEIAKFCD 193
P LT Q+V +L R+VTC+LLGV+ EE TP+ELQ H TVRPSV+E+LLEIAK+CD
Sbjct: 93 NPGKLTTRQIVVKRLGGCRKVTCQLLGVVFEEITPQELQTHATVRPSVVELLLEIAKYCD 152
Query: 194 VYLMERILDDESGEKVLSALSEAGLFTNSGLIKDKVLFCSTENGRTSFVRQLEPDWHIDT 253
+YLME +LDD+S E L AL AGLF GL+K+KVLFCS+E GRTSFVRQLE D+HIDT
Sbjct: 153 LYLMETVLDDKSEENALLALESAGLFKTGGLMKEKVLFCSSEVGRTSFVRQLEADFHIDT 212
Query: 254 SPEIVHQLARFIKYQLHISPQRAERVASNVFSSTSLEQFF 293
S +I+ QL+RFI+ QL +S ++A NVF+S SLEQFF
Sbjct: 213 SLDIISQLSRFIRCQLFVSSIEGGQLAGNVFNSPSLEQFF 252
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.137 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,748,686
Number of extensions: 226361
Number of successful extensions: 437
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 435
Number of HSP's successfully gapped: 2
Length of query: 299
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 199
Effective length of database: 11,814,401
Effective search space: 2351065799
Effective search space used: 2351065799
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)