Os04g0629000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0629000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 14.71 | 0.18 | 11.1 | -1.3 | 0.627 | -0.509 | -0.106 | 1.75 | -0.15 | 4.95 | 21.97 | 1158 | -- | -- |
| 17.09 | 0.193 | 11.1 | -1.17 | 0.65 | -1.05 | -0.238 | -- | -0.0889 | 4.87 | 20.18 | 1230 | -- | -- |
| 14.73 | 0.179 | 11.1 | -1.31 | 0.626 | -0.506 | -- | 1.77 | -0.15 | 4.96 | 21.95 | 1150 | -- | -- |
| 17.14 | 0.193 | 11.1 | -1.15 | 0.626 | -1.1 | -- | -- | -0.0999 | 4.82 | 20.01 | 1227 | -- | -- |
| 35.2 | 0.276 | 11.1 | -1.3 | -- | -0.657 | -- | 1.68 | -0.139 | -- | 21.6 | 1161 | -- | -- |
| 24.93 | 0.234 | 11.1 | -0.906 | 0.653 | -- | -0.365 | -- | -0.00844 | 4.72 | -- | -- | -- | -- |
| 25.27 | 0.235 | 11.1 | -0.904 | 0.651 | -- | -- | -- | -0.00655 | 4.76 | -- | -- | -- | -- |
| 37.06 | 0.284 | 11.1 | -1.17 | -- | -1.28 | -- | -- | -0.104 | -- | 20 | 1156 | -- | -- |
| 45.27 | 0.313 | 11.1 | -- | 0.632 | -0.676 | -- | -- | 0.0797 | 4.82 | 16 | 482 | -- | -- |
| 47.69 | 0.323 | 11.1 | -0.88 | -- | -- | -- | -- | 0.0104 | -- | -- | -- | -- | -- |
| 46.81 | 0.32 | 11 | -- | 0.634 | -- | -- | -- | 0.0941 | 4.8 | -- | -- | -- | -- |
| 66.11 | 0.379 | 11.1 | -- | -- | -0.593 | -- | -- | 0.0897 | -- | 18 | 1000 | -- | -- |
| 68.1 | 0.385 | 11.1 | -- | -- | -- | -- | -- | 0.108 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 15.24 | temperature | 20 | 1440 | < th | dose dependent | rect. | 8 | 21 |
| 15 | 15.35 | temperature | 20 | 1440 | < th | dose dependent | rect. | 20 | 21 |
| 17 | 15.36 | temperature | 20 | 1440 | < th | dose dependent | rect. | 14 | 22 |
| 34 | 15.38 | temperature | 20 | 1440 | < th | dose dependent | no | NA | NA |
| 44 | 15.38 | temperature | 20 | 1440 | < th | dose dependent | rect. | 23 | 23 |
| 119 | 15.50 | temperature | 20 | 1440 | < th | dose dependent | rect. | 15 | 13 |
| 155 | 15.55 | temperature | 20 | 1440 | < th | dose dependent | sin | 14 | NA |
| 156 | 15.55 | temperature | 25 | 1440 | < th | dose dependent | sin | 1 | NA |
| 212 | 15.61 | temperature | 25 | 1440 | < th | dose dependent | rect. | 7 | 8 |
| 214 | 15.61 | temperature | 25 | 1440 | < th | dose dependent | rect. | 5 | 11 |
| 239 | 15.63 | temperature | 25 | 1440 | < th | dose dependent | rect. | 7 | 6 |
| 255 | 15.64 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 15 |
| 312 | 15.68 | temperature | 20 | 1440 | < th | dose dependent | sin | 5 | NA |
| 394 | 15.73 | temperature | 25 | 1440 | < th | dose dependent | rect. | 8 | 3 |
| 569 | 15.90 | temperature | 20 | 1440 | < th | dose independent | rect. | 17 | 7 |
| 579 | 15.91 | temperature | 20 | 1440 | > th | dose independent | rect. | 17 | 7 |
| 638 | 15.97 | temperature | 20 | 1440 | < th | dose independent | rect. | 8 | 20 |
| 653 | 15.99 | temperature | 20 | 1440 | < th | dose dependent | rect. | 23 | 1 |
| 667 | 16.00 | temperature | 20 | 1440 | > th | dose independent | rect. | 8 | 19 |
| 724 | 16.05 | temperature | 20 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 746 | 16.07 | temperature | 20 | 1440 | < th | dose independent | sin | 16 | NA |
| 762 | 16.08 | temperature | 20 | 1440 | > th | dose independent | sin | 16 | NA |
| 905 | 16.19 | temperature | 20 | 1440 | < th | dose independent | rect. | 17 | 21 |
| 972 | 16.23 | temperature | 20 | 1440 | > th | dose independent | rect. | 16 | 22 |