BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0629000 Os04g0629000|AK059832
         (299 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G21865.1  | chr3:7701308-7703218 REVERSE LENGTH=284            260   5e-70

>AT3G21865.1 | chr3:7701308-7703218 REVERSE LENGTH=284
          Length = 283

 Score =  260 bits (665), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 124/171 (72%), Positives = 143/171 (83%)

Query: 126 QEAINQLFQPVNLTLEQLVRHKLSEGRRVTCRLLGVILEETTPEELQNHVTVRPSVLEVL 185
           Q+ ++Q FQPV  TL Q+VR KLSEGR+VTCRLLGVILEET+PEELQ   TVR SVLEVL
Sbjct: 113 QDVVDQFFQPVKPTLGQIVRQKLSEGRKVTCRLLGVILEETSPEELQKQATVRSSVLEVL 172

Query: 186 LEIAKFCDVYLMERILDDESGEKVLSALSEAGLFTNSGLIKDKVLFCSTENGRTSFVRQL 245
           LEI K+ D+YLMER+LDDES  KVL AL  AG+FT+ GL+KDKVLFCSTE GRTSFVRQL
Sbjct: 173 LEITKYSDLYLMERVLDDESEAKVLQALENAGVFTSGGLVKDKVLFCSTEIGRTSFVRQL 232

Query: 246 EPDWHIDTSPEIVHQLARFIKYQLHISPQRAERVASNVFSSTSLEQFFGGL 296
           EPDWHIDT+PEI  QLARFIKYQLH++  + ER A NVF+S S+EQFFG +
Sbjct: 233 EPDWHIDTNPEISTQLARFIKYQLHVATVKPERTAPNVFTSQSIEQFFGSV 283



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.137    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,384,518
Number of extensions: 156641
Number of successful extensions: 341
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 341
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 201
Effective length of database: 8,419,801
Effective search space: 1692380001
Effective search space used: 1692380001
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)