Os04g0672800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0672800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 14.14 | 0.177 | 10.8 | 1.29 | 0.077 | -1.27 | 0.204 | 1.49 | 0.3 | 20 | 7.943 | 54 | -- | -- |
| 15.45 | 0.183 | 10.9 | 1.08 | 0.0548 | -1.31 | 0.503 | -- | 0.25 | 16.5 | 8.202 | 40 | -- | -- |
| 14.25 | 0.176 | 10.8 | 1.28 | 0.0782 | -1.25 | -- | 1.48 | 0.294 | 20.5 | 7.889 | 57 | -- | -- |
| 15.93 | 0.186 | 10.9 | 1.07 | 0.0575 | -1.24 | -- | -- | 0.241 | 19.5 | 11.43 | 22 | -- | -- |
| 14.56 | 0.178 | 10.8 | 1.27 | -- | -1.26 | -- | 1.44 | 0.295 | -- | 6.395 | 44 | -- | -- |
| 30.34 | 0.258 | 10.9 | 0.822 | 0.345 | -- | -0.196 | -- | 0.0681 | 1.92 | -- | -- | -- | -- |
| 30.49 | 0.259 | 10.9 | 0.828 | 0.344 | -- | -- | -- | 0.0693 | 1.88 | -- | -- | -- | -- |
| 16.08 | 0.187 | 10.9 | 1.07 | -- | -1.23 | -- | -- | 0.243 | -- | 11.23 | 18 | -- | -- |
| 43.14 | 0.308 | 10.9 | -- | 0.16 | -0.721 | -- | -- | 0.0618 | 1.52 | 14.2 | 6 | -- | -- |
| 37.66 | 0.287 | 10.9 | 0.842 | -- | -- | -- | -- | 0.0772 | -- | -- | -- | -- | -- |
| 48.55 | 0.326 | 10.9 | -- | 0.36 | -- | -- | -- | -0.0229 | 1.94 | -- | -- | -- | -- |
| 44.25 | 0.311 | 10.9 | -- | -- | -0.898 | -- | -- | 0.0844 | -- | 14.2 | 6 | -- | -- |
| 56.35 | 0.35 | 10.9 | -- | -- | -- | -- | -- | -0.0162 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 14.07 | temperature | 15 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 2 | 14.22 | temperature | 10 | 30 | > th | dose dependent | no | NA | NA |
| 5 | 14.26 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 6 | 14.27 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 12 | 14.31 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 15 | 14.35 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 18 | 14.42 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 20 | 14.53 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 21 | 14.53 | temperature | 30 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 23 | 14.55 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 26 | 14.59 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 37 | 14.75 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 39 | 14.79 | temperature | 30 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 49 | 15.10 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 50 | 15.11 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 66 | 15.43 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 112 | 15.98 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 135 | 16.24 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 142 | 16.29 | temperature | 15 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 202 | 16.78 | temperature | 15 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 207 | 16.80 | temperature | 15 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 357 | 17.29 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 396 | 17.39 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 398 | 17.40 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 21 |
| 426 | 17.47 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 427 | 17.47 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 479 | 17.56 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 6 |
| 526 | 17.63 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 684 | 17.87 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 19 |
| 764 | 17.95 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 19 |
| 879 | 18.03 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 9 |
| 942 | 18.07 | temperature | 10 | 1440 | > th | dose dependent | sin | 5 | NA |