BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0626000 Os04g0626000|AK070199
         (414 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0626000  HMG-I and HMG-Y, DNA-binding domain containing...   809   0.0  
Os04g0626100  HMG-I and HMG-Y, DNA-binding domain containing...   342   2e-94

>Os04g0626000 HMG-I and HMG-Y, DNA-binding domain containing protein
          Length = 414

 Score =  809 bits (2090), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/414 (96%), Positives = 399/414 (96%)

Query: 1   MTSVENKAVAHNEPLPMEQTLSSGAKRKRGRPRKYEYGMHELPYSVQHIQSVPPLHSTQD 60
           MTSVENKAVAHNEPLPMEQTLSSGAKRKRGRPRKYEYGMHELPYSVQHIQSVPPLHSTQD
Sbjct: 1   MTSVENKAVAHNEPLPMEQTLSSGAKRKRGRPRKYEYGMHELPYSVQHIQSVPPLHSTQD 60

Query: 61  SSNIRQDGIQINHTSGGSFGPNIGTIQALPTKQGPANRSSGPRDSVNLVKTSLSQASIYT 120
           SSNIRQDGIQINHTSGGSFGPNIGTIQALPTKQGPANRSSGPRDSVNLVKTSLSQASIYT
Sbjct: 61  SSNIRQDGIQINHTSGGSFGPNIGTIQALPTKQGPANRSSGPRDSVNLVKTSLSQASIYT 120

Query: 121 SAPLQGNSVKDDIVGKYFVGKMSKKFPGFSLITVKVKDNQVLKGWIPDENNLRPITPKDD 180
           SAPLQGNSVKDDIVGKYFVGKMSKKFPGFSLITVKVKDNQVLKGWIPDENNLRPITPKDD
Sbjct: 121 SAPLQGNSVKDDIVGKYFVGKMSKKFPGFSLITVKVKDNQVLKGWIPDENNLRPITPKDD 180

Query: 181 LAPDLPMLRPSQVRKRPSTVYRQASGPIPVPLEDVTFAKPLQMRRPVEKSFTKHTVPSVP 240
           LAPDLPMLRPSQVRKRPSTVYRQASGPIPVPLEDVTFAKPLQMRRPVEKSFTKHTVPSVP
Sbjct: 181 LAPDLPMLRPSQVRKRPSTVYRQASGPIPVPLEDVTFAKPLQMRRPVEKSFTKHTVPSVP 240

Query: 241 RPHMXXXXXXXXXXXXXXXNAESRIFSEQGTEHVNPQPLSAVVPIKSGQPVLASCKEVAG 300
           RPHM               NAESRIFSEQGTEHVNPQPLSAVVPIKSGQPVLASCKEVAG
Sbjct: 241 RPHMGSGVVAAVPISVSPSNAESRIFSEQGTEHVNPQPLSAVVPIKSGQPVLASCKEVAG 300

Query: 301 GKTVNEIQTVSESSKHTEESSGERHLLNVPVMDAIKESLGPKEQPNATNSKQQTFMEPPE 360
           GKTVNEIQTVSESSKHTEESSGERHLLNVPVMDAIKESLGPKEQPNATNSKQQTFMEPPE
Sbjct: 301 GKTVNEIQTVSESSKHTEESSGERHLLNVPVMDAIKESLGPKEQPNATNSKQQTFMEPPE 360

Query: 361 STEQAVQLDTERDISKGADDSKSEASGGTAPPVEASTAVHNPQDDSHEMKVDNK 414
           STEQAVQLDTERDISKGADDSKSEASGGTAPPVEASTAVHNPQDDSHEMKVDNK
Sbjct: 361 STEQAVQLDTERDISKGADDSKSEASGGTAPPVEASTAVHNPQDDSHEMKVDNK 414



>Os04g0626100 HMG-I and HMG-Y, DNA-binding domain containing protein
          Length = 207

 Score =  342 bits (878), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 176/233 (75%), Positives = 187/233 (80%), Gaps = 26/233 (11%)

Query: 1   MTSVENKAVAHNEPLPMEQTLSSGAKRKRGRPRKYEYGMHELPYSVQHIQSVPPLHSTQD 60
           MTS ENKAV  NEP+   +  SSG+KRKRGRPRK EYGMHE PYSVQ IQSVPPLHST+D
Sbjct: 1   MTSEENKAVTPNEPI---EASSSGSKRKRGRPRKSEYGMHEKPYSVQPIQSVPPLHSTED 57

Query: 61  SSNIRQDGIQINHTSGGSFGPNIGTIQALPTKQGPANRSSGPRDSVNLVKTSLSQASIYT 120
           SSNI+QDGIQINH SGGS GP                       S NLVKTSLSQAS YT
Sbjct: 58  SSNIQQDGIQINHKSGGSVGP-----------------------SANLVKTSLSQASTYT 94

Query: 121 SAPLQGNSVKDDIVGKYFVGKMSKKFPGFSLITVKVKDNQVLKGWIPDENNLRPITPKDD 180
           SA LQ NSVKD IVGKYFVGKMS K PGFSLITVKVKDN VLKGWIPDE++LRPITPKDD
Sbjct: 95  SASLQSNSVKDGIVGKYFVGKMSNKVPGFSLITVKVKDNLVLKGWIPDESDLRPITPKDD 154

Query: 181 LAPDLPMLRPSQVRKRPSTVYRQASGPIPVPLEDVTFAKPLQMRRPVEKSFTK 233
           LAPDLPMLRPSQVRKRPST+Y+QA+GPIPVPLEDVTFAKPLQMR+PVEKS  K
Sbjct: 155 LAPDLPMLRPSQVRKRPSTIYKQAAGPIPVPLEDVTFAKPLQMRKPVEKSVAK 207



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.308    0.126    0.357 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,757,522
Number of extensions: 639483
Number of successful extensions: 1644
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1642
Number of HSP's successfully gapped: 2
Length of query: 414
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 311
Effective length of database: 11,657,759
Effective search space: 3625563049
Effective search space used: 3625563049
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 157 (65.1 bits)