Os04g0626100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : HMG-I and HMG-Y, DNA-binding domain containing protein.
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Os04g0626100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : HMG-I and HMG-Y, DNA-binding domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.36 | 0.217 | 11.6 | 0.687 | 0.764 | 0.362 | 0.0328 | 0.592 | 0.255 | 18.6 | 20.9 | 994 | -- | -- |
| 22.04 | 0.219 | 11.6 | 0.563 | 0.792 | 0.27 | 0.139 | -- | 0.187 | 18.6 | 23.7 | 2712 | -- | -- |
| 21.32 | 0.215 | 11.6 | 0.695 | 0.76 | 0.355 | -- | 0.581 | 0.249 | 18.6 | 21.1 | 968 | -- | -- |
| 22.08 | 0.219 | 11.6 | 0.563 | 0.795 | 0.273 | -- | -- | 0.188 | 18.7 | 23.66 | 2711 | -- | -- |
| 49.04 | 0.326 | 11.6 | 0.653 | -- | 0.44 | -- | 0.464 | 0.203 | -- | 21.1 | 611 | -- | -- |
| 24.89 | 0.234 | 11.6 | 0.684 | 0.781 | -- | 0.127 | -- | 0.302 | 18.8 | -- | -- | -- | -- |
| 24.93 | 0.234 | 11.6 | 0.682 | 0.782 | -- | -- | -- | 0.302 | 18.8 | -- | -- | -- | -- |
| 37.12 | 0.284 | 11.6 | 0.513 | -- | 0.563 | -- | -- | 0.113 | -- | 25.7 | 385 | -- | -- |
| 24.05 | 0.228 | 11.6 | -- | 0.784 | 0.546 | -- | -- | 0.059 | 18.7 | 21.1 | 25392 | -- | -- |
| 56.91 | 0.352 | 11.5 | 0.665 | -- | -- | -- | -- | 0.287 | -- | -- | -- | -- | -- |
| 37.19 | 0.285 | 11.6 | -- | 0.774 | -- | -- | -- | 0.226 | 18.9 | -- | -- | -- | -- |
| 44.02 | 0.309 | 11.6 | -- | -- | 0.618 | -- | -- | 0.0288 | -- | 25.7 | 385 | -- | -- |
| 68.57 | 0.387 | 11.6 | -- | -- | -- | -- | -- | 0.213 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.26 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 2 | 19.27 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 9 | 19.47 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 13 |
| 25 | 19.72 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 5 |
| 33 | 19.78 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 3 |
| 66 | 20.07 | temperature | 20 | 720 | < th | dose independent | rect. | 24 | 5 |
| 71 | 20.10 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 2 |
| 84 | 20.15 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 98 | 20.22 | temperature | 20 | 720 | > th | dose independent | rect. | 22 | 11 |
| 102 | 20.23 | temperature | 20 | 720 | > th | dose dependent | sin | 7 | NA |
| 152 | 20.34 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 14 |
| 153 | 20.34 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 22 |
| 164 | 20.37 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 20 |
| 193 | 20.44 | temperature | 25 | 720 | > th | dose independent | rect. | 4 | 5 |
| 235 | 20.50 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 11 |
| 241 | 20.52 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 4 |
| 293 | 20.60 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 4 |
| 329 | 20.65 | temperature | 25 | 90 | > th | dose independent | rect. | 1 | 19 |
| 330 | 20.65 | temperature | 30 | 720 | < th | dose dependent | sin | 8 | NA |
| 347 | 20.66 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 21 |
| 470 | 20.79 | temperature | 20 | 30 | > th | dose dependent | rect. | 23 | 21 |
| 481 | 20.81 | temperature | 25 | 90 | < th | dose independent | rect. | 3 | 9 |
| 569 | 20.91 | temperature | 25 | 270 | < th | dose independent | sin | 5 | NA |
| 596 | 20.92 | temperature | 15 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 628 | 20.95 | temperature | 25 | 90 | > th | dose independent | sin | 4 | NA |
| 667 | 20.98 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 10 |
| 673 | 20.99 | temperature | 20 | 720 | > th | dose independent | sin | 9 | NA |
| 701 | 21.00 | temperature | 10 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 719 | 21.02 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 10 |
| 723 | 21.02 | temperature | 25 | 10 | > th | dose dependent | sin | 8 | NA |
| 745 | 21.04 | temperature | 20 | 720 | > th | dose independent | sin | 23 | NA |
| 792 | 21.07 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 21 |
| 802 | 21.08 | temperature | 20 | 720 | < th | dose independent | sin | 9 | NA |
| 825 | 21.09 | temperature | 25 | 90 | > th | dose independent | rect. | 6 | 14 |
| 834 | 21.09 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 19 |
| 882 | 21.12 | temperature | 25 | 270 | < th | dose independent | rect. | 24 | 21 |
| 930 | 21.14 | temperature | 25 | 10 | > th | dose dependent | rect. | 15 | 23 |