Os04g0626000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : HMG-I and HMG-Y, DNA-binding domain containing protein.
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Os04g0626000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : HMG-I and HMG-Y, DNA-binding domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 37.51 | 0.288 | 10.3 | 0.275 | 1.09 | 0.617 | -0.0401 | 0.0838 | -0.0426 | 7.48 | 81.19 | 1217 | -- | -- |
| 37.5 | 0.285 | 10.3 | 0.266 | 1.1 | 0.631 | -0.0349 | -- | -0.0438 | 7.52 | 81.09 | 1191 | -- | -- |
| 37.5 | 0.285 | 10.3 | 0.272 | 1.1 | 0.627 | -- | 0.0678 | -0.0421 | 7.52 | 81.2 | 1191 | -- | -- |
| 37.51 | 0.285 | 10.3 | 0.265 | 1.1 | 0.632 | -- | -- | -0.0432 | 7.52 | 81.09 | 1191 | -- | -- |
| 97.66 | 0.46 | 10.4 | 0.313 | -- | 0.623 | -- | 0.16 | -0.0332 | -- | 85.1 | 1369 | -- | -- |
| 46.05 | 0.318 | 10.4 | 0.369 | 1.08 | -- | -0.13 | -- | -0.0639 | 7.07 | -- | -- | -- | -- |
| 46.1 | 0.318 | 10.4 | 0.367 | 1.08 | -- | -- | -- | -0.0635 | 7.07 | -- | -- | -- | -- |
| 97.71 | 0.46 | 10.4 | 0.299 | -- | 0.642 | -- | -- | -0.0316 | -- | 85 | 1367 | -- | -- |
| 39.24 | 0.292 | 10.4 | -- | 1.11 | 0.679 | -- | -- | -0.0638 | 7.53 | 79.01 | 1187 | -- | -- |
| 107.74 | 0.485 | 10.4 | 0.388 | -- | -- | -- | -- | -0.0441 | -- | -- | -- | -- | -- |
| 49.64 | 0.33 | 10.4 | -- | 1.09 | -- | -- | -- | -0.104 | 7.05 | -- | -- | -- | -- |
| 99.99 | 0.466 | 10.4 | -- | -- | 0.686 | -- | -- | -0.0593 | -- | 83.72 | 1363 | -- | -- |
| 111.71 | 0.493 | 10.4 | -- | -- | -- | -- | -- | -0.0871 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 35.17 | wind | 7 | 43200 | < th | dose dependent | rect. | 24 | 4 |
| 3 | 35.27 | wind | 1 | 43200 | > th | dose dependent | rect. | 24 | 4 |
| 5 | 35.43 | wind | 7 | 43200 | < th | dose dependent | rect. | 23 | 6 |
| 9 | 35.46 | wind | 1 | 43200 | > th | dose dependent | rect. | 23 | 6 |
| 13 | 35.60 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 16 |
| 21 | 35.67 | wind | 5 | 43200 | < th | dose dependent | rect. | 2 | 1 |
| 22 | 35.68 | wind | 3 | 43200 | > th | dose independent | rect. | 24 | 5 |
| 27 | 35.74 | wind | 1 | 43200 | > th | dose dependent | rect. | 2 | 1 |
| 33 | 35.77 | wind | 3 | 43200 | < th | dose independent | rect. | 23 | 6 |
| 39 | 35.81 | radiation | 10 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 42 | 35.82 | wind | 1 | 43200 | > th | dose dependent | rect. | 23 | 11 |
| 77 | 35.93 | wind | 3 | 43200 | > th | dose independent | rect. | 2 | 2 |
| 81 | 35.95 | wind | 3 | 43200 | > th | dose independent | rect. | 22 | 11 |
| 92 | 35.98 | wind | 3 | 43200 | > th | dose dependent | sin | 6 | NA |
| 94 | 35.98 | wind | 3 | 43200 | > th | dose dependent | rect. | 23 | 15 |
| 107 | 36.00 | wind | 9 | 43200 | < th | dose dependent | rect. | 24 | 11 |
| 119 | 36.02 | temperature | 25 | 14400 | < th | dose dependent | rect. | 13 | 2 |
| 131 | 36.05 | wind | 3 | 43200 | > th | dose dependent | rect. | 6 | 2 |
| 160 | 36.09 | temperature | 20 | 270 | > th | dose independent | rect. | 6 | 21 |
| 207 | 36.15 | wind | 3 | 43200 | > th | dose dependent | rect. | 4 | 6 |
| 218 | 36.17 | wind | 3 | 43200 | < th | dose independent | rect. | 23 | 10 |
| 294 | 36.27 | temperature | 20 | 30 | > th | dose independent | rect. | 9 | 19 |
| 312 | 36.29 | temperature | 20 | 14400 | > th | dose independent | rect. | 4 | 21 |
| 319 | 36.30 | wind | 5 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 337 | 36.31 | wind | 7 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 345 | 36.32 | temperature | 20 | 14400 | < th | dose independent | rect. | 4 | 21 |
| 352 | 36.33 | temperature | 20 | 14400 | < th | dose independent | rect. | 10 | 19 |
| 367 | 36.34 | wind | 7 | 43200 | > th | dose dependent | rect. | 5 | 8 |
| 371 | 36.35 | temperature | 20 | 14400 | < th | dose independent | sin | 16 | NA |
| 372 | 36.35 | temperature | 20 | 14400 | < th | dose independent | rect. | 12 | 14 |
| 379 | 36.35 | wind | 7 | 43200 | > th | dose dependent | rect. | 9 | 4 |
| 397 | 36.36 | temperature | 20 | 14400 | > th | dose independent | rect. | 8 | 22 |
| 404 | 36.36 | temperature | 25 | 14400 | < th | dose dependent | rect. | 12 | 9 |
| 406 | 36.37 | wind | 9 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 411 | 36.37 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 18 |
| 412 | 36.37 | temperature | 20 | 14400 | > th | dose independent | rect. | 10 | 19 |
| 439 | 36.38 | temperature | 25 | 14400 | < th | dose dependent | rect. | 12 | 7 |
| 491 | 36.40 | wind | 7 | 43200 | > th | dose dependent | rect. | 24 | 14 |
| 545 | 36.43 | temperature | 20 | 14400 | > th | dose independent | rect. | 23 | 23 |
| 551 | 36.43 | wind | 7 | 43200 | > th | dose dependent | rect. | 2 | 12 |
| 556 | 36.44 | temperature | 20 | 14400 | > th | dose independent | no | NA | NA |
| 564 | 36.44 | temperature | 20 | 14400 | > th | dose independent | rect. | 11 | 22 |
| 571 | 36.44 | temperature | 25 | 14400 | < th | dose dependent | sin | 20 | NA |
| 581 | 36.45 | temperature | 20 | 14400 | > th | dose independent | sin | 16 | NA |
| 582 | 36.45 | wind | 3 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 592 | 36.45 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 18 |
| 602 | 36.45 | temperature | 20 | 14400 | < th | dose independent | rect. | 24 | 22 |
| 605 | 36.45 | temperature | 20 | 14400 | > th | dose independent | rect. | 18 | 23 |
| 619 | 36.46 | temperature | 20 | 14400 | < th | dose independent | no | NA | NA |
| 672 | 36.47 | temperature | 20 | 14400 | < th | dose independent | rect. | 18 | 23 |
| 682 | 36.48 | wind | 3 | 43200 | < th | dose independent | rect. | 4 | 1 |
| 719 | 36.49 | wind | 5 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 770 | 36.50 | temperature | 10 | 4320 | > th | dose dependent | rect. | 10 | 1 |
| 777 | 36.51 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 8 |
| 802 | 36.52 | wind | 7 | 43200 | > th | dose independent | rect. | 23 | 15 |
| 823 | 36.53 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 8 |
| 841 | 36.53 | temperature | 25 | 14400 | < th | dose dependent | rect. | 5 | 14 |
| 870 | 36.54 | wind | 7 | 43200 | > th | dose dependent | rect. | 20 | 17 |
| 894 | 36.56 | wind | 7 | 43200 | < th | dose independent | rect. | 23 | 15 |
| 920 | 36.57 | wind | 9 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 933 | 36.57 | wind | 9 | 43200 | < th | dose dependent | sin | 7 | NA |
| 988 | 36.59 | wind | 9 | 43200 | < th | dose independent | rect. | 8 | 5 |