BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0624400 Os04g0624400|Os04g0624400
(208 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0624400 Tyrosinase family protein 416 e-117
Os04g0624500 Similar to Polyphenol oxidase (EC 1.10.3.1) (F... 291 3e-79
>Os04g0624400 Tyrosinase family protein
Length = 208
Score = 416 bits (1068), Expect = e-117, Method: Compositional matrix adjust.
Identities = 202/208 (97%), Positives = 202/208 (97%)
Query: 1 MISGARKKELFMGHPYSAGDQPKPGAGTVEFVLHNTVHNWTGDPRQPNGEDMGMFYSAAR 60
MISGARKKELFMGHPYSAGDQPKPGAGTVEFVLHNTVHNWTGDPRQPNGEDMGMFYSAAR
Sbjct: 1 MISGARKKELFMGHPYSAGDQPKPGAGTVEFVLHNTVHNWTGDPRQPNGEDMGMFYSAAR 60
Query: 61 DPVFFAHHGNVDRMWYIRHGLFPRDTDFTDPDWLDATFLFYDEEARLXXXXXXDSLDEAA 120
DPVFFAHHGNVDRMWYIRHGLFPRDTDFTDPDWLDATFLFYDEEARL DSLDEAA
Sbjct: 61 DPVFFAHHGNVDRMWYIRHGLFPRDTDFTDPDWLDATFLFYDEEARLVRVRVRDSLDEAA 120
Query: 121 LRYTYQDVGPLPWLNAKPSTGPAGALPGTLDKTVRVALTRPKTSRSRKEKDAEEEAPVIE 180
LRYTYQDVGPLPWLNAKPSTGPAGALPGTLDKTVRVALTRPKTSRSRKEKDAEEEAPVIE
Sbjct: 121 LRYTYQDVGPLPWLNAKPSTGPAGALPGTLDKTVRVALTRPKTSRSRKEKDAEEEAPVIE 180
Query: 181 GIEVPDHSAYVKFDVFVNAPENADVASR 208
GIEVPDHSAYVKFDVFVNAPENADVASR
Sbjct: 181 GIEVPDHSAYVKFDVFVNAPENADVASR 208
>Os04g0624500 Similar to Polyphenol oxidase (EC 1.10.3.1) (Fragment)
Length = 570
Score = 291 bits (744), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 157/212 (74%), Positives = 170/212 (80%), Gaps = 15/212 (7%)
Query: 1 MISGARKKELFMGHPYSAGDQPKPGAGTVEFVLHNTVHNWTGDPRQPNGEDMGMFYSAAR 60
MISGARK ELFMG PY AGDQP+PGAGTVE V HN VH WTGDPRQPNGEDMG+FYSAAR
Sbjct: 290 MISGARKAELFMGQPYRAGDQPEPGAGTVESVPHNPVHRWTGDPRQPNGEDMGIFYSAAR 349
Query: 61 DPVFFAHHGNVDRMWYIRHG-LFPRDTDFTDPDWLDATFLFYDEEARLXXXXXXDSLDEA 119
DPVFFAHHGNVDRMW+IR G LFP DTDFTDPDWLDA+F FYDEEARL D+LD +
Sbjct: 350 DPVFFAHHGNVDRMWHIRRGLLFPGDTDFTDPDWLDASFFFYDEEARLVRVRVRDTLDPS 409
Query: 120 ALRYTYQDVGPLPWLNAKPSTGPAGA-------LPGTLDKTVRVALTRPKTSRSRKEKDA 172
ALR+TYQDVG LPWLNAKPSTG A P TLDKTVRVA+TRP+ SRSR+EK+
Sbjct: 410 ALRFTYQDVG-LPWLNAKPSTGAASTPAPAAGAFPATLDKTVRVAVTRPRASRSREEKEE 468
Query: 173 EEEAPVIEGIEVPDHSAYVKFDVFVNAPENAD 204
EEE E+PDHS YVKFDVFVNAPE+ D
Sbjct: 469 EEEV------EIPDHSTYVKFDVFVNAPESGD 494
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.136 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,258,578
Number of extensions: 371699
Number of successful extensions: 872
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 867
Number of HSP's successfully gapped: 2
Length of query: 208
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 112
Effective length of database: 12,023,257
Effective search space: 1346604784
Effective search space used: 1346604784
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 154 (63.9 bits)