BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0616900 Os04g0616900|AK066343
(396 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0616900 Conserved hypothetical protein 791 0.0
Os04g0614200 80 4e-15
Os07g0200500 Conserved hypothetical protein 79 8e-15
Os07g0199250 Conserved hypothetical protein 79 8e-15
Os09g0414950 72 5e-13
Os04g0614225 67 2e-11
>Os04g0616900 Conserved hypothetical protein
Length = 396
Score = 791 bits (2042), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/396 (96%), Positives = 384/396 (96%)
Query: 1 MELSGDAAVVSGSGNRKRKRHVQQHSLEYPCVSRLRHRRLLAFLSRHDYDSTFDALVQET 60
MELSGDAAVVSGSGNRKRKRHVQQHSLEYPCVSRLRHRRLLAFLSRHDYDSTFDALVQET
Sbjct: 1 MELSGDAAVVSGSGNRKRKRHVQQHSLEYPCVSRLRHRRLLAFLSRHDYDSTFDALVQET 60
Query: 61 SVLFRVGHIQALVRQGRWADAASYVNRFVPPSRVLTDAGLVFHEFLYIHHVLDCIVAGDH 120
SVLFRVGHIQALVRQGRWADAASYVNRFVPPSRVLTDAGLVFHEFLYIHHVLDCIVAGDH
Sbjct: 61 SVLFRVGHIQALVRQGRWADAASYVNRFVPPSRVLTDAGLVFHEFLYIHHVLDCIVAGDH 120
Query: 121 LRGAQVAASYQRHVRDNPNPSHGAIKLIRILLTILHCHPIRAFLNWHLVRYKAAEIIKDL 180
LRGAQVAASYQRHVRDNPNPSHGAIKLIRILLTILHCHPIRAFLNWHLVRYKAAEIIKDL
Sbjct: 121 LRGAQVAASYQRHVRDNPNPSHGAIKLIRILLTILHCHPIRAFLNWHLVRYKAAEIIKDL 180
Query: 181 IPQIPEFNDLLKLPKGGPIKPHNILPIGSSSHRRRHVKNEDRIPPDIARFYLQKKRGLPS 240
IPQIPEFNDLLKLPKGGPIKPHNILPIGSSSHRRRHVKNEDRIPPDIARFYLQKKRGLPS
Sbjct: 181 IPQIPEFNDLLKLPKGGPIKPHNILPIGSSSHRRRHVKNEDRIPPDIARFYLQKKRGLPS 240
Query: 241 STICQERYYTGLSRNAANWLADIIDKSLQAGVLRDGYPFKHSCNEGVTGAPIGLDSPANS 300
STICQERYYTGLSRNAANWLADIIDKSLQAGVLRDGYPFKHSCNEGVTGAPIGLDSPANS
Sbjct: 241 STICQERYYTGLSRNAANWLADIIDKSLQAGVLRDGYPFKHSCNEGVTGAPIGLDSPANS 300
Query: 301 YGISTQTIADMMRPLIISDIGQGSVARNNPTRPETTAHQAISPTTQQITTEFVQHSESQF 360
YGISTQTIADMMRPLIISDIGQGSVARNNPTRPETTAHQAISPTTQQITTEFVQHSESQF
Sbjct: 301 YGISTQTIADMMRPLIISDIGQGSVARNNPTRPETTAHQAISPTTQQITTEFVQHSESQF 360
Query: 361 QEYNSQMDGRVRIVESGMKXXXXXXXXXXXXVEISS 396
QEYNSQMDGRVRIVESGMK VEISS
Sbjct: 361 QEYNSQMDGRVRIVESGMKRSRSFGGGCSSSVEISS 396
>Os04g0614200
Length = 163
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 76/144 (52%), Gaps = 11/144 (7%)
Query: 28 EYPCVSRLRHRRLLAFLSRHDYDSTFDALVQETSVLFRVGHIQALVRQGRWADAASYVNR 87
+YPCV+RLRHRRLL+FL H + STF+A+ +ET VL + ++ L+ +G W +A Y R
Sbjct: 20 DYPCVARLRHRRLLSFLWLHSFKSTFEAMAEETKVLLSLPRLERLIARGMWGEAIGYACR 79
Query: 88 FV---PPSRV-----LTDAGLVFHEFLYIHHVLDCIVAGDHLRGAQVAASYQRHV--RDN 137
F+ PPS LT FL++H +VAG+ A +R+ R
Sbjct: 80 FLPRRPPSLPAQRTHLTAEAQTLLLFLHMHRCFADVVAGNETGAAWSDKHRRRYCLARVT 139
Query: 138 PNPSHGAIKLIRILLTILHCHPIR 161
SH AI + RI+ T + IR
Sbjct: 140 GISSH-AIAIRRIIQTFVLSDKIR 162
>Os07g0200500 Conserved hypothetical protein
Length = 198
Score = 78.6 bits (192), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 86/174 (49%), Gaps = 23/174 (13%)
Query: 28 EYPCVSRLRHRRLLAFLSRHDYDSTFDALVQETSVLFRVGHIQALVRQGRWADAASYVNR 87
EY CV+RLRHRRLL FL H + STF+A+ +ET VL + ++ L+ W DA Y+ R
Sbjct: 23 EYRCVTRLRHRRLLTFLWLHGFRSTFEAMAEETKVLVSLPRLERLITSSMWDDAIGYICR 82
Query: 88 FVPPSRV-----------LTDAGLVFHEFLYIHHVLDCIVAGDHLRGAQVAASYQRHVRD 136
F+PPS L++ FL++H +VAG+ GA + ++R
Sbjct: 83 FLPPSSGSTGQRRRRGSHLSEEAQTLLLFLHMHKSFADVVAGNKA-GAAWSDKHRRLYAQ 141
Query: 137 NP--NPSHGAIKLIRILLTIL-------HCHPIRAFLNWHLVRYKAAEIIKDLI 181
+ +P A ++ R +L+ + C A +WH K+ + I DLI
Sbjct: 142 SSGLSPYSHAARIRRSILSFVLSDRTRCSCQYSLANFDWH--HDKSWKKIWDLI 193
>Os07g0199250 Conserved hypothetical protein
Length = 198
Score = 78.6 bits (192), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 86/174 (49%), Gaps = 23/174 (13%)
Query: 28 EYPCVSRLRHRRLLAFLSRHDYDSTFDALVQETSVLFRVGHIQALVRQGRWADAASYVNR 87
EY CV+RLRHRRLL FL H + STF+A+ +ET VL + ++ L+ W DA Y+ R
Sbjct: 23 EYRCVTRLRHRRLLTFLWLHGFRSTFEAMAEETKVLVSLPRLERLITSSMWDDAIGYICR 82
Query: 88 FVPPSRV-----------LTDAGLVFHEFLYIHHVLDCIVAGDHLRGAQVAASYQRHVRD 136
F+PPS L++ FL++H +VAG+ GA + ++R
Sbjct: 83 FLPPSSGSTGQRRRRGSHLSEEAQTLLLFLHMHKSFADVVAGNKA-GAAWSDKHRRLYAQ 141
Query: 137 NP--NPSHGAIKLIRILLTIL-------HCHPIRAFLNWHLVRYKAAEIIKDLI 181
+ +P A ++ R +L+ + C A +WH K+ + I DLI
Sbjct: 142 SSGLSPYSHAARIRRSILSFVLSDRTRCSCQYSLANFDWH--HDKSWKKIWDLI 193
>Os09g0414950
Length = 255
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 91/191 (47%), Gaps = 8/191 (4%)
Query: 51 STFDALVQETSVLFRVGHIQALVRQGRWADAASYVNRFVPPSRVLTDAGLVFHEFLYIHH 110
+T DAL ET + +Q ++ RW +A YV RF+P ++ +A V Y+
Sbjct: 31 ATLDALGGETRLFLNARTLQTMLADCRWEEARRYVGRFLPRRQIGVEARAVLRLIAYLSA 90
Query: 111 VLDCIVAGDHLRGAQVAASY-QRHVRDNPNPSHGAI--KLIRILLTILHCHPIRA-FLNW 166
V D VA G++ A + +R + S+ + +R P R + W
Sbjct: 91 VDD--VAQGRRPGSEFAGDHLEREFEADATSSNTMVCADFVRKFSRKRSSFPGRWDSVEW 148
Query: 167 HLVRYKAAEIIKDLIPQIPEFNDLLKLPKGGPIKPHNILPIGSSSHRRRHVKNEDRIPPD 226
+R +AA I+K+L+ PEF+ LL+LP+ P+ P ++P+ R+ K R+P
Sbjct: 149 QFLRIQAALIVKELVINTPEFSHLLRLPR-YPVNPECMMPVWFGCCRKHQRKIIGRMPAS 207
Query: 227 -IARFYLQKKR 236
+A +L K+R
Sbjct: 208 LLAHCFLPKER 218
>Os04g0614225
Length = 261
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 58/110 (52%), Gaps = 8/110 (7%)
Query: 185 PEFNDLLKLPKGGPIKPHNILPIGSSSHRRRHVKNEDRIPP-DIARFYLQKKRGLPSS-T 242
PE L LP GG +KPHN+LPIG +RHV+ + R IA+ YL+ KR +PSS
Sbjct: 22 PELAGFLDLP-GGMVKPHNVLPIGFGFRSKRHVRQQRRPRAYTIAQLYLEMKRCVPSSGQ 80
Query: 243 ICQERYYTGLSRNAANWLADIIDKSLQAGVLRDG-----YPFKHSCNEGV 287
Q GLS A W+A I+D SL+AG YP + S +G
Sbjct: 81 PDQGLSLEGLSDKARGWMAHILDSSLRAGCESSEHHQWRYPLRSSEKKGT 130
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.136 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,922,807
Number of extensions: 607619
Number of successful extensions: 1309
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 1305
Number of HSP's successfully gapped: 7
Length of query: 396
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 293
Effective length of database: 11,657,759
Effective search space: 3415723387
Effective search space used: 3415723387
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 157 (65.1 bits)