Os07g0200500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0200500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 78.34 | 0.416 | 7 | 2.49 | 1.11 | -1.1 | -0.611 | 1.66 | 0.964 | 3.52 | 18.72 | 4485 | -- | -- |
| 81.66 | 0.421 | 7.06 | 2.26 | 1.26 | -1.21 | -0.646 | -- | 0.878 | 3.37 | 17.9 | 4007 | -- | -- |
| 79.4 | 0.415 | 7.01 | 2.47 | 1.1 | -1.12 | -- | 1.5 | 0.955 | 3.55 | 18.08 | 4495 | -- | -- |
| 81 | 0.419 | 7.07 | 2.11 | 1.13 | -1.22 | -- | -- | 0.858 | 3.5 | 16.2 | 4230 | -- | -- |
| 101.98 | 0.473 | 7.03 | 2.15 | -- | -1.87 | -- | 1.21 | 0.985 | -- | 18.4 | 4733 | -- | -- |
| 108.79 | 0.489 | 7.12 | 1.53 | 1.07 | -- | -0.621 | -- | 0.607 | 3.55 | -- | -- | -- | -- |
| 109.96 | 0.491 | 7.12 | 1.54 | 1.07 | -- | -- | -- | 0.61 | 3.61 | -- | -- | -- | -- |
| 103.57 | 0.476 | 7.06 | 1.95 | -- | -1.82 | -- | -- | 0.928 | -- | 18.4 | 4733 | -- | -- |
| 166.21 | 0.604 | 7.14 | -- | 0.884 | -0.599 | -- | -- | 0.523 | 3.88 | 21.89 | 2258 | -- | -- |
| 173.77 | 0.616 | 7.12 | 1.58 | -- | -- | -- | -- | 0.639 | -- | -- | -- | -- | -- |
| 172.33 | 0.614 | 7.16 | -- | 1.1 | -- | -- | -- | 0.439 | 3.6 | -- | -- | -- | -- |
| 196.53 | 0.655 | 7.12 | -- | -- | -1.3 | -- | -- | 0.636 | -- | 21.89 | 2258 | -- | -- |
| 239.89 | 0.723 | 7.16 | -- | -- | -- | -- | -- | 0.463 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 75.91 | humidity | 80 | 43200 | < th | dose independent | rect. | 15 | 4 |
| 3 | 76.17 | humidity | 80 | 43200 | > th | dose dependent | rect. | 17 | 3 |
| 4 | 76.20 | humidity | 80 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 6 | 76.29 | humidity | 80 | 43200 | > th | dose dependent | rect. | 16 | 6 |
| 12 | 76.35 | humidity | 80 | 43200 | > th | dose independent | rect. | 16 | 3 |
| 14 | 76.42 | temperature | 15 | 4320 | > th | dose dependent | rect. | 23 | 2 |
| 43 | 76.71 | humidity | 90 | 43200 | < th | dose independent | rect. | 10 | 14 |
| 49 | 76.74 | humidity | 90 | 43200 | < th | dose independent | sin | 19 | NA |
| 78 | 76.90 | humidity | 80 | 43200 | > th | dose dependent | rect. | 10 | 12 |
| 110 | 77.03 | humidity | 90 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 118 | 77.05 | temperature | 30 | 4320 | < th | dose dependent | rect. | 23 | 1 |
| 135 | 77.10 | humidity | 90 | 43200 | < th | dose independent | rect. | 5 | 20 |
| 144 | 77.13 | humidity | 80 | 43200 | > th | dose dependent | sin | 20 | NA |
| 157 | 77.16 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 4 |
| 194 | 77.24 | humidity | 80 | 43200 | > th | dose dependent | rect. | 5 | 17 |
| 237 | 77.34 | humidity | 90 | 43200 | > th | dose independent | rect. | 5 | 21 |
| 242 | 77.35 | humidity | 90 | 43200 | > th | dose independent | rect. | 10 | 12 |
| 250 | 77.37 | humidity | 90 | 43200 | > th | dose independent | sin | 20 | NA |
| 275 | 77.42 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 12 |
| 288 | 77.45 | humidity | 90 | 43200 | > th | dose independent | rect. | 9 | 16 |
| 297 | 77.46 | temperature | 20 | 43200 | < th | dose dependent | rect. | 24 | 1 |
| 307 | 77.47 | humidity | 90 | 43200 | > th | dose dependent | rect. | 5 | 7 |
| 315 | 77.49 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 6 |
| 323 | 77.50 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 325 | 77.50 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 4 |
| 330 | 77.50 | humidity | 90 | 43200 | > th | dose independent | rect. | 5 | 17 |
| 344 | 77.51 | temperature | 20 | 43200 | < th | dose dependent | rect. | 15 | 12 |
| 351 | 77.52 | temperature | 20 | 43200 | < th | dose dependent | rect. | 16 | 10 |
| 379 | 77.55 | radiation | 1 | 43200 | > th | dose independent | rect. | 17 | 12 |
| 392 | 77.56 | temperature | 20 | 43200 | < th | dose dependent | sin | 15 | NA |
| 491 | 77.63 | radiation | 1 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 526 | 77.65 | humidity | 90 | 43200 | > th | dose dependent | rect. | 5 | 3 |
| 637 | 77.72 | temperature | 20 | 43200 | < th | dose dependent | no | NA | NA |
| 648 | 77.72 | temperature | 20 | 43200 | < th | dose dependent | rect. | 21 | 22 |
| 649 | 77.72 | temperature | 20 | 43200 | < th | dose dependent | rect. | 5 | 23 |
| 683 | 77.74 | temperature | 15 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 707 | 77.75 | humidity | 90 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 735 | 77.76 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 792 | 77.79 | temperature | 15 | 4320 | > th | dose dependent | sin | 12 | NA |
| 886 | 77.85 | radiation | 1 | 43200 | < th | dose independent | sin | 15 | NA |
| 891 | 77.85 | radiation | 1 | 43200 | < th | dose independent | rect. | 8 | 21 |
| 961 | 77.89 | radiation | 1 | 43200 | < th | dose independent | rect. | 8 | 14 |
| 966 | 77.89 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 2 |
| 974 | 77.90 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 977 | 77.90 | radiation | 1 | 43200 | < th | dose independent | rect. | 8 | 11 |
| 996 | 77.91 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 7 | 4 |