Os04g0616900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0616900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 65.43 | 0.38 | 12.3 | 0.479 | 1.83 | 0.834 | -0.274 | -0.539 | 0.0534 | 21 | 18.13 | 10 | -- | -- |
| 66.06 | 0.379 | 12.3 | 0.475 | 1.85 | 0.807 | -0.79 | -- | 0.0434 | 21 | 18.63 | 8 | -- | -- |
| 65.52 | 0.377 | 12.3 | 0.483 | 1.83 | 0.836 | -- | -0.683 | 0.0534 | 21 | 16.93 | 10 | -- | -- |
| 68.14 | 0.384 | 12.3 | 0.502 | 1.83 | 0.821 | -- | -- | 0.058 | 21 | 16.3 | 10 | -- | -- |
| 154.1 | 0.578 | 12.3 | 0.437 | -- | 1.76 | -- | -0.734 | 0.0724 | -- | 7.722 | 3 | -- | -- |
| 77.5 | 0.413 | 12.4 | 0.455 | 2.52 | -- | -0.712 | -- | 0.0371 | 21.9 | -- | -- | -- | -- |
| 79.46 | 0.417 | 12.4 | 0.482 | 2.53 | -- | -- | -- | 0.0385 | 21.9 | -- | -- | -- | -- |
| 157.02 | 0.584 | 12.3 | 0.462 | -- | 1.76 | -- | -- | 0.0724 | -- | 7.908 | 2 | -- | -- |
| 74.5 | 0.402 | 12.4 | -- | 1.79 | 0.832 | -- | -- | -4e-04 | 20.9 | 13.17 | 8 | -- | -- |
| 461.64 | 1 | 12.3 | 0.51 | -- | -- | -- | -- | 0.0382 | -- | -- | -- | -- | -- |
| 85.59 | 0.433 | 12.4 | -- | 2.53 | -- | -- | -- | -0.0152 | 21.9 | -- | -- | -- | -- |
| 162.5 | 0.594 | 12.3 | -- | -- | 1.77 | -- | -- | 0.0186 | -- | 8.75 | 2 | -- | -- |
| 468.51 | 1.01 | 12.3 | -- | -- | -- | -- | -- | -0.0185 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 60.42 | humidity | 70 | 10 | > th | dose dependent | sin | 3 | NA |
| 4 | 60.83 | humidity | 70 | 10 | > th | dose dependent | rect. | 2 | 17 |
| 6 | 60.92 | humidity | 80 | 10 | > th | dose independent | rect. | 2 | 16 |
| 9 | 61.04 | humidity | 70 | 90 | > th | dose dependent | rect. | 1 | 16 |
| 12 | 61.08 | radiation | 10 | 30 | < th | dose dependent | sin | 2 | NA |
| 16 | 61.15 | humidity | 80 | 10 | > th | dose independent | rect. | 2 | 14 |
| 23 | 61.21 | humidity | 70 | 10 | > th | dose dependent | rect. | 2 | 14 |
| 55 | 61.78 | humidity | 90 | 10 | < th | dose dependent | sin | 5 | NA |
| 56 | 61.78 | humidity | 90 | 10 | < th | dose dependent | rect. | 20 | 19 |
| 60 | 61.88 | humidity | 50 | 10 | > th | dose dependent | rect. | 2 | 17 |
| 62 | 61.88 | radiation | 20 | 90 | < th | dose dependent | rect. | 1 | 18 |
| 68 | 61.89 | humidity | 50 | 10 | > th | dose dependent | sin | 4 | NA |
| 73 | 61.95 | radiation | 20 | 90 | < th | dose dependent | rect. | 23 | 20 |
| 81 | 62.00 | humidity | 50 | 90 | > th | dose dependent | rect. | 1 | 18 |
| 152 | 62.50 | humidity | 80 | 10 | > th | dose independent | sin | 3 | NA |
| 172 | 62.65 | radiation | 20 | 10 | < th | dose dependent | rect. | 2 | 18 |
| 174 | 62.66 | temperature | 10 | 270 | > th | dose dependent | rect. | 24 | 17 |
| 183 | 62.71 | humidity | 80 | 10 | < th | dose independent | rect. | 7 | 8 |
| 192 | 62.77 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 8 |
| 214 | 62.84 | radiation | 10 | 270 | < th | dose dependent | rect. | 23 | 18 |
| 217 | 62.85 | humidity | 80 | 10 | < th | dose independent | rect. | 4 | 11 |
| 223 | 62.87 | humidity | 80 | 10 | < th | dose independent | rect. | 2 | 13 |
| 234 | 62.89 | temperature | 10 | 270 | > th | dose dependent | rect. | 23 | 19 |
| 235 | 62.90 | radiation | 1 | 270 | < th | dose independent | rect. | 23 | 18 |
| 240 | 62.91 | humidity | 80 | 10 | < th | dose independent | rect. | 22 | 17 |
| 243 | 62.91 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 5 |
| 263 | 62.99 | humidity | 80 | 10 | < th | dose independent | rect. | 24 | 15 |
| 268 | 63.00 | temperature | 30 | 270 | < th | dose independent | rect. | 18 | 17 |
| 342 | 63.32 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 4 |
| 366 | 63.41 | humidity | 80 | 10 | < th | dose independent | sin | 3 | NA |
| 410 | 63.55 | temperature | 30 | 90 | < th | dose independent | rect. | 20 | 17 |
| 429 | 63.61 | humidity | 90 | 10 | < th | dose dependent | rect. | 3 | 12 |
| 434 | 63.62 | humidity | 90 | 10 | < th | dose dependent | rect. | 5 | 10 |
| 465 | 63.71 | humidity | 90 | 10 | < th | dose dependent | rect. | 24 | 15 |
| 491 | 63.80 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 3 |
| 640 | 64.15 | radiation | 20 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 648 | 64.18 | temperature | 15 | 270 | > th | dose independent | rect. | 6 | 17 |
| 650 | 64.19 | temperature | 15 | 270 | > th | dose independent | rect. | 18 | 5 |
| 660 | 64.24 | humidity | 80 | 90 | < th | dose independent | sin | 5 | NA |
| 667 | 64.26 | radiation | 1 | 90 | > th | dose independent | sin | 2 | NA |
| 677 | 64.28 | radiation | 10 | 270 | < th | dose dependent | rect. | 23 | 9 |
| 735 | 64.43 | radiation | 1 | 90 | < th | dose independent | sin | 2 | NA |
| 756 | 64.47 | temperature | 15 | 270 | > th | dose independent | rect. | 18 | 17 |
| 765 | 64.49 | radiation | 10 | 270 | < th | dose dependent | rect. | 23 | 11 |
| 782 | 64.54 | radiation | 10 | 90 | < th | dose independent | rect. | 1 | 18 |
| 796 | 64.56 | radiation | 20 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 881 | 64.73 | radiation | 20 | 10 | < th | dose dependent | rect. | 13 | 20 |
| 905 | 64.78 | temperature | 15 | 270 | > th | dose independent | rect. | 17 | 7 |
| 933 | 64.83 | radiation | 1 | 270 | < th | dose independent | rect. | 18 | 5 |
| 942 | 64.85 | humidity | 60 | 270 | > th | dose independent | rect. | 18 | 5 |
| 947 | 64.86 | temperature | 30 | 270 | < th | dose independent | rect. | 18 | 5 |
| 953 | 64.87 | radiation | 1 | 270 | > th | dose independent | sin | 6 | NA |
| 954 | 64.87 | radiation | 1 | 270 | < th | dose independent | sin | 5 | NA |
| 964 | 64.89 | atmosphere | 995 | 270 | > th | dose independent | rect. | 18 | 5 |
| 971 | 64.90 | radiation | 10 | 270 | < th | dose dependent | rect. | 18 | 5 |
| 984 | 64.92 | wind | 9 | 270 | < th | dose independent | rect. | 23 | 19 |