BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0611200 Os04g0611200|Os04g0611200
         (437 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0611200  Transferase family protein                          733   0.0  
Os03g0745200  Transferase family protein                           69   8e-12

>Os04g0611200 Transferase family protein
          Length = 437

 Score =  733 bits (1893), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/437 (86%), Positives = 380/437 (86%)

Query: 1   MVLEGQETPAAAAVHGHRLSTVVPSSVTGEANXXXXXXXXXXXXXXXRGAYYYPAGDAVR 60
           MVLEGQETPAAAAVHGHRLSTVVPSSVTGEAN               RGAYYYPAGDAVR
Sbjct: 1   MVLEGQETPAAAAVHGHRLSTVVPSSVTGEANYDLADADLAYKLHYLRGAYYYPAGDAVR 60

Query: 61  GITIKSLKDPMFPWLDAYFPVXXXXXXXXXXXXXXXXXXXPYIKCNDCGVRIVEARCDRA 120
           GITIKSLKDPMFPWLDAYFPV                   PYIKCNDCGVRIVEARCDRA
Sbjct: 61  GITIKSLKDPMFPWLDAYFPVAGRIRRAEGDDADAAAARRPYIKCNDCGVRIVEARCDRA 120

Query: 121 LDDWLRDESPDRLRHLCYDKVLGPELFFSPLLYIQVTSFKCGGMALGFSWAHLIGDVASA 180
           LDDWLRDESPDRLRHLCYDKVLGPELFFSPLLYIQVTSFKCGGMALGFSWAHLIGDVASA
Sbjct: 121 LDDWLRDESPDRLRHLCYDKVLGPELFFSPLLYIQVTSFKCGGMALGFSWAHLIGDVASA 180

Query: 181 TACFNTWAQILSGKKPAGTVLEPANKPLDRXXXXXXXXXXRSVKPVGPIEDHWLVPAGRA 240
           TACFNTWAQILSGKKPAGTVLEPANKPLDR          RSVKPVGPIEDHWLVPAGRA
Sbjct: 181 TACFNTWAQILSGKKPAGTVLEPANKPLDRAPAAAAAAPPRSVKPVGPIEDHWLVPAGRA 240

Query: 241 MAWYSFRVTEPALKKLQSAAGRHAAGTFELVSALLWQAVAKIRAAASKEVTTVTVVRTDM 300
           MAWYSFRVTEPALKKLQSAAGRHAAGTFELVSALLWQAVAKIRAAASKEVTTVTVVRTDM
Sbjct: 241 MAWYSFRVTEPALKKLQSAAGRHAAGTFELVSALLWQAVAKIRAAASKEVTTVTVVRTDM 300

Query: 301 AARSGKSLANEQRVGYVEAASSPAKTDVAELAAMLAGDKVVDETGAVAAFPGDVVVYGGA 360
           AARSGKSLANEQRVGYVEAASSPAKTDVAELAAMLAGDKVVDETGAVAAFPGDVVVYGGA
Sbjct: 301 AARSGKSLANEQRVGYVEAASSPAKTDVAELAAMLAGDKVVDETGAVAAFPGDVVVYGGA 360

Query: 361 NLTFVDMEQVAPYELELKGQRPVHVEYGLDGVGEEGAVLVQPDAGGRGRVVTVVIPRDEV 420
           NLTFVDMEQVAPYELELKGQRPVHVEYGLDGVGEEGAVLVQPDAGGRGRVVTVVIPRDEV
Sbjct: 361 NLTFVDMEQVAPYELELKGQRPVHVEYGLDGVGEEGAVLVQPDAGGRGRVVTVVIPRDEV 420

Query: 421 DXXXXXXXXXXXXXQDA 437
           D             QDA
Sbjct: 421 DSLRAALGSTLLLLQDA 437



>Os03g0745200 Transferase family protein
          Length = 466

 Score = 68.9 bits (167), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 74/185 (40%), Gaps = 24/185 (12%)

Query: 103 IKCNDCGVRIVEARCDRALDDWLRDESPDRLRHLCYDKVLGPELFFSPLLYIQVTSFKCG 162
           +KCND GVR V+A     LD+WL   S +    L Y + +GP+ +     Y+Q+T F   
Sbjct: 112 VKCNDAGVRTVDATAAATLDEWLATASGEEEMDLAYFEPMGPDPYIWSPFYVQLTEFADK 171

Query: 163 GMALGFSWAHLIGDVASATACFNTWAQILSGKKPAGTVLEPANKPLDRXXXXXXXXXXRS 222
             ALG S  HL  D  +A    N WA       P    L                    +
Sbjct: 172 SYALGLSCTHLHNDPTAAVLFLNAWAAAHRRDSPYPPFLH---------------SPALA 216

Query: 223 VKPVGPIEDHWLVPA--------GRAMAWYSFRVTEPALKKLQSAAGRHAAGTFELVSAL 274
            K   P  +H L+ A        G  M+  +FR +  A++ L SA        F  ++AL
Sbjct: 217 AKSAAPPPEHPLLAAKSRGSPDTGGEMSSATFRFSAAAMRALLSAV-EPGTTPFAALAAL 275

Query: 275 LWQAV 279
            W  V
Sbjct: 276 FWLRV 280



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.135    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,636,755
Number of extensions: 521528
Number of successful extensions: 1312
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1317
Number of HSP's successfully gapped: 2
Length of query: 437
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 333
Effective length of database: 11,605,545
Effective search space: 3864646485
Effective search space used: 3864646485
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)