BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0609900 Os04g0609900|J090092E13
(204 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0609900 Conserved hypothetical protein 394 e-110
Os04g0610000 Conserved hypothetical protein 124 7e-29
>Os04g0609900 Conserved hypothetical protein
Length = 204
Score = 394 bits (1013), Expect = e-110, Method: Compositional matrix adjust.
Identities = 191/204 (93%), Positives = 191/204 (93%)
Query: 1 QYSHILILHHVGRLVHPSLFPQIQXXXXXXXXXXXXXTYISSTGSKSFARILDEESCSRD 60
QYSHILILHHVGRLVHPSLFPQIQ TYISSTGSKSFARILDEESCSRD
Sbjct: 1 QYSHILILHHVGRLVHPSLFPQIQAASARCKASRAKSTYISSTGSKSFARILDEESCSRD 60
Query: 61 KARKRSDDVTAMGEKRRGRMHNHEPGASPSGLKEKAALKASFKEAVDAKEIAENEAATLR 120
KARKRSDDVTAMGEKRRGRMHNHEPGASPSGLKEKAALKASFKEAVDAKEIAENEAATLR
Sbjct: 61 KARKRSDDVTAMGEKRRGRMHNHEPGASPSGLKEKAALKASFKEAVDAKEIAENEAATLR 120
Query: 121 KKMMVMEESQKKLQEDLANMRNTVSAMQKMMSNGGLPDGLMGASTAPPSFPQGQNASSSR 180
KKMMVMEESQKKLQEDLANMRNTVSAMQKMMSNGGLPDGLMGASTAPPSFPQGQNASSSR
Sbjct: 121 KKMMVMEESQKKLQEDLANMRNTVSAMQKMMSNGGLPDGLMGASTAPPSFPQGQNASSSR 180
Query: 181 DDLQSPYIDYSVLYNPNSSSQQTR 204
DDLQSPYIDYSVLYNPNSSSQQTR
Sbjct: 181 DDLQSPYIDYSVLYNPNSSSQQTR 204
>Os04g0610000 Conserved hypothetical protein
Length = 767
Score = 124 bits (310), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 67/109 (61%), Positives = 82/109 (75%), Gaps = 7/109 (6%)
Query: 91 GLKEKAALKASFKEAVDAKEIAENEAATLRKKMMVMEESQKKLQEDLANMRNTVSAMQKM 150
G + KA L+ASFKEA +AK AE+EAATLRKKM+ MEESQKKLQEDLANM++TVSAMQK
Sbjct: 660 GHRRKAVLQASFKEAEEAKRKAEDEAATLRKKMVAMEESQKKLQEDLANMKSTVSAMQKT 719
Query: 151 MSNGGLPDGLMGASTAPPSFPQGQNASSSRDDLQSPYIDYSVLYNPNSS 199
S G L DG +FPQ QN+ S+ + LQ PY+DYS LY+P++S
Sbjct: 720 TSTGDLSDGQTQ------NFPQVQNSRSAHEILQ-PYLDYSALYDPSAS 761
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.310 0.124 0.339
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,222,342
Number of extensions: 233108
Number of successful extensions: 895
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 893
Number of HSP's successfully gapped: 2
Length of query: 204
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 108
Effective length of database: 12,023,257
Effective search space: 1298511756
Effective search space used: 1298511756
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 153 (63.5 bits)