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Os04g0610000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.79 (0.0164) R2 : 0.0247
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.117 (0.0345) R2dN8 : 0.0319 R2N8 : 0.0247
σ : 0.309
deviance : 43.82
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
15.6 0.186 9.78 0.428 0.599 -0.456 -0.028 -0.213 0.171 1.85 78.54 1383 -- --
15.63 0.184 9.78 0.443 0.597 -0.468 -0.038 -- 0.174 1.85 78.85 1382 -- --
15.6 0.184 9.78 0.428 0.599 -0.457 -- -0.216 0.172 1.85 78.53 1382 -- --
15.64 0.184 9.78 0.446 0.597 -0.47 -- -- 0.175 1.85 78.94 1382 -- --
22.3 0.221 9.78 0.476 -- -0.381 -- -0.0928 0.151 -- 78 33 -- --
18.3 0.201 9.78 0.421 0.577 -- -0.0911 -- 0.153 1.75 -- -- -- --
18.33 0.2 9.78 0.424 0.577 -- -- -- 0.154 1.75 -- -- -- --
22.29 0.221 9.78 0.482 -- -0.383 -- -- 0.157 -- 78 21 -- --
20.61 0.211 9.79 -- 0.614 -0.423 -- -- 0.133 1.84 82.62 1353 -- --
38.54 0.29 9.78 0.447 -- -- -- -- 0.167 -- -- -- -- --
23.06 0.225 9.79 -- 0.585 -- -- -- 0.107 1.77 -- -- -- --
28.22 0.247 9.79 -- -- -0.383 -- -- 0.0994 -- 78.53 42 -- --
43.82 0.309 9.79 -- -- -- -- -- 0.117 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 15.06 temperature 20.0 30 > th dose independent rect. 18 11
3 15.16 precipitation 0.1 14400 > th dose dependent rect. 17 1
4 15.17 precipitation 0.1 14400 > th dose independent rect. 17 1
6 15.29 humidity 70.0 1440 > th dose dependent rect. 11 1
8 15.39 humidity 70.0 1440 > th dose dependent rect. 2 14
9 15.41 precipitation 0.1 14400 < th dose independent rect. 17 1
10 15.41 humidity 80.0 1440 < th dose independent rect. 11 2
11 15.41 precipitation 0.1 14400 < th dose dependent rect. 17 1
18 15.43 humidity 70.0 1440 > th dose dependent rect. 1 18
20 15.44 humidity 80.0 1440 < th dose independent rect. 10 4
27 15.45 humidity 70.0 1440 > th dose dependent sin 2 NA
35 15.49 humidity 80.0 1440 > th dose independent rect. 10 4
46 15.51 humidity 80.0 1440 > th dose independent rect. 11 1
49 15.53 temperature 20.0 10 > th dose independent rect. 18 22
54 15.54 humidity 70.0 1440 > th dose dependent rect. 8 7
58 15.55 humidity 80.0 1440 < th dose independent rect. 22 19
61 15.56 humidity 80.0 1440 > th dose independent rect. 1 15
62 15.56 humidity 80.0 1440 < th dose independent rect. 1 15
74 15.57 humidity 80.0 1440 < th dose independent sin 2 NA
75 15.57 humidity 80.0 1440 < th dose independent rect. 3 13
88 15.58 humidity 80.0 1440 < th dose independent rect. 5 11
102 15.59 humidity 80.0 1440 > th dose independent rect. 5 11
110 15.60 humidity 80.0 1440 > th dose independent sin 2 NA
113 15.60 humidity 70.0 1440 > th dose independent rect. 11 7
150 15.63 humidity 70.0 1440 < th dose independent rect. 15 2
152 15.63 humidity 70.0 1440 > th dose independent rect. 14 4
164 15.64 humidity 70.0 1440 > th dose independent rect. 15 1
181 15.64 precipitation 0.1 4320 > th dose dependent rect. 2 15
212 15.66 humidity 80.0 1440 < th dose independent rect. 19 22
293 15.71 precipitation 0.1 14400 > th dose dependent rect. 12 4
305 15.72 precipitation 0.1 14400 > th dose independent rect. 13 3
306 15.72 precipitation 0.1 14400 < th dose independent rect. 13 3
307 15.72 precipitation 0.1 14400 > th dose independent rect. 12 5
311 15.72 precipitation 0.1 4320 > th dose independent rect. 2 15
323 15.72 precipitation 0.1 14400 < th dose dependent rect. 13 3
325 15.72 precipitation 0.1 14400 > th dose dependent rect. 9 8
335 15.73 precipitation 0.1 14400 < th dose independent rect. 12 5
342 15.73 precipitation 0.1 4320 < th dose independent rect. 2 15
355 15.73 precipitation 0.1 14400 < th dose dependent rect. 12 5
360 15.73 precipitation 0.1 4320 < th dose dependent rect. 2 15
428 15.76 humidity 80.0 1440 < th dose independent rect. 8 19
432 15.76 humidity 80.0 1440 < th dose independent rect. 6 21
436 15.76 precipitation 0.1 4320 > th dose dependent rect. 2 12
449 15.77 precipitation 0.1 14400 > th dose independent rect. 9 8
455 15.77 temperature 20.0 90 < th dose independent rect. 17 12
489 15.78 temperature 20.0 10 < th dose independent sin 12 NA
490 15.78 humidity 80.0 1440 < th dose independent no NA NA
499 15.78 temperature 20.0 10 < th dose independent rect. 17 13
537 15.79 wind 9.0 14400 < th dose independent rect. 10 1
581 15.79 humidity 80.0 1440 < th dose independent rect. 13 23
595 15.80 precipitation 0.1 14400 > th dose independent rect. 15 1
596 15.80 precipitation 0.1 14400 < th dose independent rect. 15 1
625 15.80 precipitation 0.1 14400 > th dose dependent rect. 15 1
626 15.80 precipitation 0.1 14400 < th dose dependent rect. 15 1
629 15.80 temperature 25.0 90 < th dose dependent rect. 16 13
637 15.80 humidity 70.0 1440 > th dose dependent rect. 18 22
639 15.80 humidity 70.0 1440 > th dose dependent rect. 7 23
652 15.81 temperature 20.0 10 < th dose independent rect. 17 11
675 15.81 humidity 70.0 1440 > th dose dependent no NA NA
734 15.82 humidity 70.0 1440 > th dose dependent rect. 5 23
755 15.83 temperature 20.0 10 > th dose independent rect. 7 23
758 15.83 wind 3.0 43200 < th dose dependent rect. 23 7
781 15.83 humidity 70.0 1440 > th dose dependent rect. 13 23
814 15.84 humidity 70.0 1440 > th dose independent rect. 11 22
847 15.85 temperature 25.0 90 < th dose dependent sin 13 NA
848 15.85 temperature 25.0 270 < th dose dependent sin 15 NA
874 15.86 precipitation 0.1 4320 > th dose independent rect. 3 11
900 15.87 temperature 20.0 90 < th dose independent sin 13 NA
919 15.87 humidity 80.0 14400 > th dose dependent rect. 13 1
945 15.88 temperature 20.0 10 > th dose independent sin 11 NA
951 15.88 precipitation 0.1 4320 < th dose independent rect. 3 11
960 15.88 precipitation 0.1 4320 < th dose dependent rect. 3 11
981 15.89 humidity 80.0 14400 > th dose independent rect. 13 3
982 15.89 wind 9.0 14400 < th dose independent rect. 7 4
993 15.89 humidity 80.0 1440 > th dose independent rect. 6 21