BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0610000 Os04g0610000|AK065814
(767 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G40087.1 | chr1:14999762-15001868 REVERSE LENGTH=391 77 4e-14
AT3G30200.1 | chr3:11827752-11834262 REVERSE LENGTH=511 63 5e-10
>AT1G40087.1 | chr1:14999762-15001868 REVERSE LENGTH=391
Length = 390
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 71/302 (23%), Positives = 122/302 (40%), Gaps = 21/302 (6%)
Query: 440 SGEPVGKEAGTLSTFLGALARDGILAPLTHQDWRRVPEKNKDVMYHIV--KLKFDIAPAA 497
+ +P+G G L ++L L+ D +L P+ + DWR V KD + ++ K +FD
Sbjct: 73 TNQPIGDSGGLLGSWLSQLSNDIMLLPINYTDWRLVSPHIKDRAWAVIQSKFRFDDPMMR 132
Query: 498 EFWIMKCIGRKWKSWKALLKQKHYDTHETVEECLADQNPRVLKEQWQYLVAYWGTEKAKA 557
+ ++M +G K K K +++ + E L ++ +V ++QW +LV T+K +
Sbjct: 133 KDYVMGALGSKCKDVKLRFWREY--KRNNLNETLQNRPEKVPEDQWSHLVHLIFTDKWRK 190
Query: 558 VSSRNKACRANVTATHTAGTKSFARIIEEEKQKRPNNEEPTAADLFLLTHTHRNGK---- 613
+ RN + N H G KSF+R +E K K + P A+ F+ + +G
Sbjct: 191 MQERNTKNQKNHIMPHLCGRKSFSRKRDEIKIK--TGKTPCRAEFFIESRKKHDGSFVSD 248
Query: 614 --PMKKEKADIIARVREQSHKQAECSGSDSAAHKVGLESCSIGLRGKRGHRRKAVLQASF 671
++ E + + Q S D + G E R R + V +
Sbjct: 249 EAKLRAEALTTLLNLNPQVTYNGTASLDDEYSQVFGPE---------RPGRVRCVGRGPT 299
Query: 672 XXXXXXXXXXXXXXXTLRKKMVAMEESQKKLQEDLANMKSTVSAMQKTTSTGDLSDGQTQ 731
++VA ++Q K D N ST STG+ + T
Sbjct: 300 PSRLVRHSNATRRQDIENSELVAQLKTQVKTLGDQVNAMSTFLGQILGNSTGEQASAWTA 359
Query: 732 NF 733
NF
Sbjct: 360 NF 361
>AT3G30200.1 | chr3:11827752-11834262 REVERSE LENGTH=511
Length = 510
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 79/166 (47%), Gaps = 6/166 (3%)
Query: 455 LGALARDGILAPLTHQDWRRVPEKNKDVMYHIV--KLKFDIAPAAEFWIMKCIGRKWKSW 512
+G L+ D +L P+ + DWR V KD + ++ K +FD + ++M +G + K
Sbjct: 208 IGQLSNDVMLLPINYTDWRLVSPHIKDRAWAVIQSKFRFDDPMMRKDYVMGALGSRCKDV 267
Query: 513 KALLKQKHYDTHETVEECLADQNPRVLKEQWQYLVAYWGTEKAKAVSSRNKACRANVTAT 572
K ++H + E L ++ +V ++QW +LV T+K + + RN + N
Sbjct: 268 KLRFWREH--KRNNLNETLENRPEKVPEDQWSHLVHLRFTDKWRKMQERNTKNQKNHIMP 325
Query: 573 HTAGTKSFARIIEEEKQKRPNNEEPTAADLFLLTHTHRNGKPMKKE 618
H G KSF+R +E K K + P + F+ + +G + E
Sbjct: 326 HLCGRKSFSRKRDEIKIK--TGKTPCRVEFFIESRKKHDGSFVSDE 369
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.312 0.125 0.360
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 16,216,184
Number of extensions: 680813
Number of successful extensions: 1971
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1971
Number of HSP's successfully gapped: 2
Length of query: 767
Length of database: 11,106,569
Length adjustment: 106
Effective length of query: 661
Effective length of database: 8,200,473
Effective search space: 5420512653
Effective search space used: 5420512653
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 116 (49.3 bits)